miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11420 5' -56.9 NC_003085.1 + 41203 1.13 0.000332
Target:  5'- gGGCUCAUGGCACCCUCCGGAACUCGCu -3'
miRNA:   3'- -CCGAGUACCGUGGGAGGCCUUGAGCG- -5'
11420 5' -56.9 NC_003085.1 + 35872 0.77 0.131658
Target:  5'- uGGCgUCAUGGCGCgCCUCCGGugcccACguccacgCGCg -3'
miRNA:   3'- -CCG-AGUACCGUG-GGAGGCCu----UGa------GCG- -5'
11420 5' -56.9 NC_003085.1 + 24453 0.73 0.231426
Target:  5'- cGCU-GUGGC-CCUUCUGGcGCUCGCa -3'
miRNA:   3'- cCGAgUACCGuGGGAGGCCuUGAGCG- -5'
11420 5' -56.9 NC_003085.1 + 48518 0.72 0.272583
Target:  5'- cGGCcugUC-UGGCACCCggacgcggccgacgcUCCaGGACUCGCu -3'
miRNA:   3'- -CCG---AGuACCGUGGG---------------AGGcCUUGAGCG- -5'
11420 5' -56.9 NC_003085.1 + 14930 0.72 0.276729
Target:  5'- aGCgCGUGGCGCUccaaCUCgCGGAACUgCGCg -3'
miRNA:   3'- cCGaGUACCGUGG----GAG-GCCUUGA-GCG- -5'
11420 5' -56.9 NC_003085.1 + 13562 0.72 0.283751
Target:  5'- uGGC-CGUGGCAUggCC-CUGGGACUcCGCg -3'
miRNA:   3'- -CCGaGUACCGUG--GGaGGCCUUGA-GCG- -5'
11420 5' -56.9 NC_003085.1 + 47108 0.72 0.290913
Target:  5'- cGGcCUCGcacuGCGCCUcCCGGAugUCGCa -3'
miRNA:   3'- -CC-GAGUac--CGUGGGaGGCCUugAGCG- -5'
11420 5' -56.9 NC_003085.1 + 18109 0.72 0.305659
Target:  5'- cGGCUgcgCAUGGCGgCCUaCCGGuACguccgCGCg -3'
miRNA:   3'- -CCGA---GUACCGUgGGA-GGCCuUGa----GCG- -5'
11420 5' -56.9 NC_003085.1 + 36288 0.71 0.32884
Target:  5'- uGCU-GUGGUGCCgCUCUGaGAACUUGCa -3'
miRNA:   3'- cCGAgUACCGUGG-GAGGC-CUUGAGCG- -5'
11420 5' -56.9 NC_003085.1 + 9146 0.7 0.361727
Target:  5'- ------cGGCACCUggCGGAGCUCGCc -3'
miRNA:   3'- ccgaguaCCGUGGGagGCCUUGAGCG- -5'
11420 5' -56.9 NC_003085.1 + 36502 0.7 0.387853
Target:  5'- aGCUCugccGGgGCCUUCCGGAcGCggCGCg -3'
miRNA:   3'- cCGAGua--CCgUGGGAGGCCU-UGa-GCG- -5'
11420 5' -56.9 NC_003085.1 + 33338 0.7 0.387853
Target:  5'- uGGUcaUCcgGGCGucgaCCUCCaGGAugUCGCc -3'
miRNA:   3'- -CCG--AGuaCCGUg---GGAGG-CCUugAGCG- -5'
11420 5' -56.9 NC_003085.1 + 16239 0.7 0.396833
Target:  5'- cGGCUCAUGGaGCCCggCCGaGugcCUCGg -3'
miRNA:   3'- -CCGAGUACCgUGGGa-GGC-Cuu-GAGCg -5'
11420 5' -56.9 NC_003085.1 + 30116 0.69 0.405946
Target:  5'- uGGcCUUA-GGCACCUgCCGGGcCUCGUu -3'
miRNA:   3'- -CC-GAGUaCCGUGGGaGGCCUuGAGCG- -5'
11420 5' -56.9 NC_003085.1 + 4454 0.69 0.405946
Target:  5'- cGC-CGUcGGCGCacuguUCUCCGGggUUCGCc -3'
miRNA:   3'- cCGaGUA-CCGUG-----GGAGGCCuuGAGCG- -5'
11420 5' -56.9 NC_003085.1 + 12610 0.69 0.415189
Target:  5'- cGCgCGUGGCGCCCcgggcgCUGGAuucugacaauCUCGCu -3'
miRNA:   3'- cCGaGUACCGUGGGa-----GGCCUu---------GAGCG- -5'
11420 5' -56.9 NC_003085.1 + 40621 0.69 0.415189
Target:  5'- --gUCAUGGCcgcCCCUCCu--GCUCGCg -3'
miRNA:   3'- ccgAGUACCGu--GGGAGGccuUGAGCG- -5'
11420 5' -56.9 NC_003085.1 + 3214 0.69 0.420797
Target:  5'- aGGCUCGgcGGUACCUgcucgcauucaaaCCGGAACccuUCGCc -3'
miRNA:   3'- -CCGAGUa-CCGUGGGa------------GGCCUUG---AGCG- -5'
11420 5' -56.9 NC_003085.1 + 26554 0.69 0.434057
Target:  5'- gGGCUUcgccccGGCAgCCUCCGccGGAgUCGCa -3'
miRNA:   3'- -CCGAGua----CCGUgGGAGGC--CUUgAGCG- -5'
11420 5' -56.9 NC_003085.1 + 14922 0.69 0.434057
Target:  5'- cGGCUgGUGGCGCUCgcggCCGcuGugUUGCu -3'
miRNA:   3'- -CCGAgUACCGUGGGa---GGCc-UugAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.