Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11420 | 5' | -56.9 | NC_003085.1 | + | 21882 | 0.66 | 0.621307 |
Target: 5'- aGGC-CGUGu--CCCUCCaGGACUuCGCg -3' miRNA: 3'- -CCGaGUACcguGGGAGGcCUUGA-GCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 22914 | 0.68 | 0.503739 |
Target: 5'- aGGCUgcCggGGCgaaGCCCUCCGaGGC-CGCg -3' miRNA: 3'- -CCGA--GuaCCG---UGGGAGGCcUUGaGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 24453 | 0.73 | 0.231426 |
Target: 5'- cGCU-GUGGC-CCUUCUGGcGCUCGCa -3' miRNA: 3'- cCGAgUACCGuGGGAGGCCuUGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 24674 | 0.66 | 0.610404 |
Target: 5'- gGGCUgAgcGGCACCauguUCCGGucCUUGUg -3' miRNA: 3'- -CCGAgUa-CCGUGGg---AGGCCuuGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 26554 | 0.69 | 0.434057 |
Target: 5'- gGGCUUcgccccGGCAgCCUCCGccGGAgUCGCa -3' miRNA: 3'- -CCGAGua----CCGUgGGAGGC--CUUgAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 29945 | 0.68 | 0.507873 |
Target: 5'- uGGC-CAUGGCacaggcccuccagcaGCCCUCCGGcaa--GCa -3' miRNA: 3'- -CCGaGUACCG---------------UGGGAGGCCuugagCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 30116 | 0.69 | 0.405946 |
Target: 5'- uGGcCUUA-GGCACCUgCCGGGcCUCGUu -3' miRNA: 3'- -CC-GAGUaCCGUGGGaGGCCUuGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 32943 | 0.67 | 0.556338 |
Target: 5'- cGGCUCAacaGGCGCgCCUgCCau-GCUUGCg -3' miRNA: 3'- -CCGAGUa--CCGUG-GGA-GGccuUGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 33159 | 0.67 | 0.544609 |
Target: 5'- gGGCcaucccgUCAUGGCGCCUgcUCCaGuAgUCGCg -3' miRNA: 3'- -CCG-------AGUACCGUGGG--AGGcCuUgAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 33338 | 0.7 | 0.387853 |
Target: 5'- uGGUcaUCcgGGCGucgaCCUCCaGGAugUCGCc -3' miRNA: 3'- -CCG--AGuaCCGUg---GGAGG-CCUugAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 35264 | 0.66 | 0.610404 |
Target: 5'- cGGCUCugcaGGCACuUCUgaaagcugcCCGGAACaUUGCu -3' miRNA: 3'- -CCGAGua--CCGUG-GGA---------GGCCUUG-AGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 35872 | 0.77 | 0.131658 |
Target: 5'- uGGCgUCAUGGCGCgCCUCCGGugcccACguccacgCGCg -3' miRNA: 3'- -CCG-AGUACCGUG-GGAGGCCu----UGa------GCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 36288 | 0.71 | 0.32884 |
Target: 5'- uGCU-GUGGUGCCgCUCUGaGAACUUGCa -3' miRNA: 3'- cCGAgUACCGUGG-GAGGC-CUUGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 36502 | 0.7 | 0.387853 |
Target: 5'- aGCUCugccGGgGCCUUCCGGAcGCggCGCg -3' miRNA: 3'- cCGAGua--CCgUGGGAGGCCU-UGa-GCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 40621 | 0.69 | 0.415189 |
Target: 5'- --gUCAUGGCcgcCCCUCCu--GCUCGCg -3' miRNA: 3'- ccgAGUACCGu--GGGAGGccuUGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 41203 | 1.13 | 0.000332 |
Target: 5'- gGGCUCAUGGCACCCUCCGGAACUCGCu -3' miRNA: 3'- -CCGAGUACCGUGGGAGGCCUUGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 47108 | 0.72 | 0.290913 |
Target: 5'- cGGcCUCGcacuGCGCCUcCCGGAugUCGCa -3' miRNA: 3'- -CC-GAGUac--CGUGGGaGGCCUugAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 48518 | 0.72 | 0.272583 |
Target: 5'- cGGCcugUC-UGGCACCCggacgcggccgacgcUCCaGGACUCGCu -3' miRNA: 3'- -CCG---AGuACCGUGGG---------------AGGcCUUGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 48765 | 0.66 | 0.621307 |
Target: 5'- uGCUCAggccGCGCCCgaggCCGGA---CGCg -3' miRNA: 3'- cCGAGUac--CGUGGGa---GGCCUugaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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