miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11422 3' -55.7 NC_003085.1 + 33592 0.66 0.682361
Target:  5'- -aGCGGUGGCAUGaaGCGGcuucgGCg -3'
miRNA:   3'- gcUGCCGCCGUACggUGCCaacaaCG- -5'
11422 3' -55.7 NC_003085.1 + 42381 0.66 0.671424
Target:  5'- --uCGGCGGCAUGagCGCGGgccUUGUc -3'
miRNA:   3'- gcuGCCGCCGUACg-GUGCCaacAACG- -5'
11422 3' -55.7 NC_003085.1 + 27511 0.66 0.660451
Target:  5'- aCGACGGCGGCGccGgCAUGGaUGa--- -3'
miRNA:   3'- -GCUGCCGCCGUa-CgGUGCCaACaacg -5'
11422 3' -55.7 NC_003085.1 + 2509 0.66 0.660451
Target:  5'- uGACGGaCGGUGUGCCcgcguCGGccccUGCg -3'
miRNA:   3'- gCUGCC-GCCGUACGGu----GCCaacaACG- -5'
11422 3' -55.7 NC_003085.1 + 32046 0.66 0.649451
Target:  5'- uGGgGGCGGCGagugGCCugGGggacaGCa -3'
miRNA:   3'- gCUgCCGCCGUa---CGGugCCaacaaCG- -5'
11422 3' -55.7 NC_003085.1 + 41561 0.66 0.638435
Target:  5'- -cGCGGCGGCA-GUCGCGGga---GCc -3'
miRNA:   3'- gcUGCCGCCGUaCGGUGCCaacaaCG- -5'
11422 3' -55.7 NC_003085.1 + 42895 0.67 0.605392
Target:  5'- gGAUGG-GGCGcUGUCACgGGUUGU-GCc -3'
miRNA:   3'- gCUGCCgCCGU-ACGGUG-CCAACAaCG- -5'
11422 3' -55.7 NC_003085.1 + 46013 0.67 0.593314
Target:  5'- aCGACGGCcgggcagGGCAUGUCAgUGGgcucUGCg -3'
miRNA:   3'- -GCUGCCG-------CCGUACGGU-GCCaacaACG- -5'
11422 3' -55.7 NC_003085.1 + 30721 0.67 0.583462
Target:  5'- gCGGCGGCuucGGCAUGCUGCGcagGaagGCg -3'
miRNA:   3'- -GCUGCCG---CCGUACGGUGCcaaCaa-CG- -5'
11422 3' -55.7 NC_003085.1 + 48492 0.68 0.572554
Target:  5'- -cACGGCGGCGUGUCcugccccggcaGCGGccUGUcugGCa -3'
miRNA:   3'- gcUGCCGCCGUACGG-----------UGCCa-ACAa--CG- -5'
11422 3' -55.7 NC_003085.1 + 8795 0.68 0.550893
Target:  5'- gCGcCGGCGGCu--CCGCGag-GUUGCg -3'
miRNA:   3'- -GCuGCCGCCGuacGGUGCcaaCAACG- -5'
11422 3' -55.7 NC_003085.1 + 17237 0.68 0.550893
Target:  5'- -cGCGGCGcccCGUGCuCugGGcggUGUUGCg -3'
miRNA:   3'- gcUGCCGCc--GUACG-GugCCa--ACAACG- -5'
11422 3' -55.7 NC_003085.1 + 29474 0.68 0.550893
Target:  5'- aCGACGGCGGCAggGCCGuacuUGGccaGgaacUGCu -3'
miRNA:   3'- -GCUGCCGCCGUa-CGGU----GCCaa-Ca---ACG- -5'
11422 3' -55.7 NC_003085.1 + 3872 0.68 0.550893
Target:  5'- uCGACGGCGcGCccgccgucUGUCGCGGUg---GCa -3'
miRNA:   3'- -GCUGCCGC-CGu-------ACGGUGCCAacaaCG- -5'
11422 3' -55.7 NC_003085.1 + 14921 0.68 0.540155
Target:  5'- cCGGCuGGUGGCGcucgcgGCCGCuG-UGUUGCu -3'
miRNA:   3'- -GCUG-CCGCCGUa-----CGGUGcCaACAACG- -5'
11422 3' -55.7 NC_003085.1 + 11102 0.68 0.540155
Target:  5'- uCGcCGGCGGCAuucgUGCC-CaGGaaGUUGCg -3'
miRNA:   3'- -GCuGCCGCCGU----ACGGuG-CCaaCAACG- -5'
11422 3' -55.7 NC_003085.1 + 38195 0.68 0.5189
Target:  5'- gGGCuGGCGGCAacucggGCgGCGGUggcucgUGCa -3'
miRNA:   3'- gCUG-CCGCCGUa-----CGgUGCCAaca---ACG- -5'
11422 3' -55.7 NC_003085.1 + 39897 0.69 0.508397
Target:  5'- uCGGCGGCGGCAgGCCAaacgccgcucuuUGGgaugggGUcGCu -3'
miRNA:   3'- -GCUGCCGCCGUaCGGU------------GCCaa----CAaCG- -5'
11422 3' -55.7 NC_003085.1 + 35785 0.69 0.497985
Target:  5'- gCGACGGcCGGUguccuUGuCCAUGGg-GUUGCg -3'
miRNA:   3'- -GCUGCC-GCCGu----AC-GGUGCCaaCAACG- -5'
11422 3' -55.7 NC_003085.1 + 18124 0.69 0.477454
Target:  5'- gGGCGGgaCGGCcgGCCugGGacGUcUGCu -3'
miRNA:   3'- gCUGCC--GCCGuaCGGugCCaaCA-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.