Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11422 | 3' | -55.7 | NC_003085.1 | + | 40888 | 1.13 | 0.000434 |
Target: 5'- aCGACGGCGGCAUGCCACGGUUGUUGCg -3' miRNA: 3'- -GCUGCCGCCGUACGGUGCCAACAACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 29430 | 0.73 | 0.299862 |
Target: 5'- gGGCGGCGGCaAUGCCGuccuccaGGcugaGUUGCg -3' miRNA: 3'- gCUGCCGCCG-UACGGUg------CCaa--CAACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 41387 | 0.73 | 0.299862 |
Target: 5'- uGACGGUGGUggGUgACGGccgUGUUGUc -3' miRNA: 3'- gCUGCCGCCGuaCGgUGCCa--ACAACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 5539 | 0.72 | 0.330929 |
Target: 5'- -aACGGCGGCG-GCCAucCGGUUGgcggacaUGCu -3' miRNA: 3'- gcUGCCGCCGUaCGGU--GCCAACa------ACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 40577 | 0.72 | 0.330929 |
Target: 5'- uGGCGGUGcGCAUGCCagacGCGGUgacGUggaUGCc -3' miRNA: 3'- gCUGCCGC-CGUACGG----UGCCAa--CA---ACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 9506 | 0.72 | 0.339057 |
Target: 5'- aCGAUGGCGGCGcGCgGCGGgucaucgGCu -3' miRNA: 3'- -GCUGCCGCCGUaCGgUGCCaacaa--CG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 24706 | 0.71 | 0.390818 |
Target: 5'- gGACGGCGGCAUcggcgGCUucGCGGg---UGCc -3' miRNA: 3'- gCUGCCGCCGUA-----CGG--UGCCaacaACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 40556 | 0.7 | 0.455366 |
Target: 5'- aCGACGGCacGGUgacgGCCGCGGUggaccccaagUGCa -3' miRNA: 3'- -GCUGCCG--CCGua--CGGUGCCAaca-------ACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 32138 | 0.7 | 0.437711 |
Target: 5'- aCGGgGGCGGCugGUGgCGCGGUggGUuacgGCg -3' miRNA: 3'- -GCUgCCGCCG--UACgGUGCCAa-CAa---CG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 30008 | 0.7 | 0.418563 |
Target: 5'- aGugGcCGGUGUGCCACgGGUUGgUGUc -3' miRNA: 3'- gCugCcGCCGUACGGUG-CCAACaACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 12017 | 0.7 | 0.437711 |
Target: 5'- -uGCGGUGGCggGCgCGgGGUUGgcGCu -3' miRNA: 3'- gcUGCCGCCGuaCG-GUgCCAACaaCG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 18124 | 0.69 | 0.477454 |
Target: 5'- gGGCGGgaCGGCcgGCCugGGacGUcUGCu -3' miRNA: 3'- gCUGCC--GCCGuaCGGugCCaaCA-ACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 39897 | 0.69 | 0.508397 |
Target: 5'- uCGGCGGCGGCAgGCCAaacgccgcucuuUGGgaugggGUcGCu -3' miRNA: 3'- -GCUGCCGCCGUaCGGU------------GCCaa----CAaCG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 35785 | 0.69 | 0.497985 |
Target: 5'- gCGACGGcCGGUguccuUGuCCAUGGg-GUUGCg -3' miRNA: 3'- -GCUGCC-GCCGu----AC-GGUGCCaaCAACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 8795 | 0.68 | 0.550893 |
Target: 5'- gCGcCGGCGGCu--CCGCGag-GUUGCg -3' miRNA: 3'- -GCuGCCGCCGuacGGUGCcaaCAACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 17237 | 0.68 | 0.550893 |
Target: 5'- -cGCGGCGcccCGUGCuCugGGcggUGUUGCg -3' miRNA: 3'- gcUGCCGCc--GUACG-GugCCa--ACAACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 29474 | 0.68 | 0.550893 |
Target: 5'- aCGACGGCGGCAggGCCGuacuUGGccaGgaacUGCu -3' miRNA: 3'- -GCUGCCGCCGUa-CGGU----GCCaa-Ca---ACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 48492 | 0.68 | 0.572554 |
Target: 5'- -cACGGCGGCGUGUCcugccccggcaGCGGccUGUcugGCa -3' miRNA: 3'- gcUGCCGCCGUACGG-----------UGCCa-ACAa--CG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 3872 | 0.68 | 0.550893 |
Target: 5'- uCGACGGCGcGCccgccgucUGUCGCGGUg---GCa -3' miRNA: 3'- -GCUGCCGC-CGu-------ACGGUGCCAacaaCG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 11102 | 0.68 | 0.540155 |
Target: 5'- uCGcCGGCGGCAuucgUGCC-CaGGaaGUUGCg -3' miRNA: 3'- -GCuGCCGCCGU----ACGGuG-CCaaCAACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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