miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11422 3' -55.7 NC_003085.1 + 3872 0.68 0.550893
Target:  5'- uCGACGGCGcGCccgccgucUGUCGCGGUg---GCa -3'
miRNA:   3'- -GCUGCCGC-CGu-------ACGGUGCCAacaaCG- -5'
11422 3' -55.7 NC_003085.1 + 48492 0.68 0.572554
Target:  5'- -cACGGCGGCGUGUCcugccccggcaGCGGccUGUcugGCa -3'
miRNA:   3'- gcUGCCGCCGUACGG-----------UGCCa-ACAa--CG- -5'
11422 3' -55.7 NC_003085.1 + 30721 0.67 0.583462
Target:  5'- gCGGCGGCuucGGCAUGCUGCGcagGaagGCg -3'
miRNA:   3'- -GCUGCCG---CCGUACGGUGCcaaCaa-CG- -5'
11422 3' -55.7 NC_003085.1 + 46013 0.67 0.593314
Target:  5'- aCGACGGCcgggcagGGCAUGUCAgUGGgcucUGCg -3'
miRNA:   3'- -GCUGCCG-------CCGUACGGU-GCCaacaACG- -5'
11422 3' -55.7 NC_003085.1 + 42895 0.67 0.605392
Target:  5'- gGAUGG-GGCGcUGUCACgGGUUGU-GCc -3'
miRNA:   3'- gCUGCCgCCGU-ACGGUG-CCAACAaCG- -5'
11422 3' -55.7 NC_003085.1 + 41561 0.66 0.638435
Target:  5'- -cGCGGCGGCA-GUCGCGGga---GCc -3'
miRNA:   3'- gcUGCCGCCGUaCGGUGCCaacaaCG- -5'
11422 3' -55.7 NC_003085.1 + 32046 0.66 0.649451
Target:  5'- uGGgGGCGGCGagugGCCugGGggacaGCa -3'
miRNA:   3'- gCUgCCGCCGUa---CGGugCCaacaaCG- -5'
11422 3' -55.7 NC_003085.1 + 2509 0.66 0.660451
Target:  5'- uGACGGaCGGUGUGCCcgcguCGGccccUGCg -3'
miRNA:   3'- gCUGCC-GCCGUACGGu----GCCaacaACG- -5'
11422 3' -55.7 NC_003085.1 + 27511 0.66 0.660451
Target:  5'- aCGACGGCGGCGccGgCAUGGaUGa--- -3'
miRNA:   3'- -GCUGCCGCCGUa-CgGUGCCaACaacg -5'
11422 3' -55.7 NC_003085.1 + 42381 0.66 0.671424
Target:  5'- --uCGGCGGCAUGagCGCGGgccUUGUc -3'
miRNA:   3'- gcuGCCGCCGUACg-GUGCCaacAACG- -5'
11422 3' -55.7 NC_003085.1 + 33592 0.66 0.682361
Target:  5'- -aGCGGUGGCAUGaaGCGGcuucgGCg -3'
miRNA:   3'- gcUGCCGCCGUACggUGCCaacaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.