Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11422 | 5' | -55.5 | NC_003085.1 | + | 708 | 0.66 | 0.670785 |
Target: 5'- gGGGCAAcuccgCGUGGCGccugacgCGCCGCUc-- -3' miRNA: 3'- -CCCGUUca---GUACCGCa------GUGGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 5925 | 0.68 | 0.549251 |
Target: 5'- -cGCAAG-C-UGGaCG-CGCCGCCUUCg -3' miRNA: 3'- ccCGUUCaGuACC-GCaGUGGCGGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 7269 | 0.73 | 0.289591 |
Target: 5'- uGGGUgaagGAGaCGUGGCG-CACCGCCg-- -3' miRNA: 3'- -CCCG----UUCaGUACCGCaGUGGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 10027 | 0.68 | 0.549251 |
Target: 5'- cGGGCAA-UCAUGGUGcgggaAUCGCCUg- -3' miRNA: 3'- -CCCGUUcAGUACCGCag---UGGCGGAag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 12341 | 0.7 | 0.397359 |
Target: 5'- uGGGCAAGggcacgcgccaCAUGGUGUCGCUguGCCg-- -3' miRNA: 3'- -CCCGUUCa----------GUACCGCAGUGG--CGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 14917 | 0.67 | 0.571081 |
Target: 5'- cGGGCcGGcUgGUGGCGcUCGCgGCCg-- -3' miRNA: 3'- -CCCGuUC-AgUACCGC-AGUGgCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 16466 | 0.68 | 0.538432 |
Target: 5'- cGGCAGuGUCcgaccuGCG-CGCCGCCUUCc -3' miRNA: 3'- cCCGUU-CAGuac---CGCaGUGGCGGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 17966 | 0.66 | 0.681817 |
Target: 5'- uGGCGguAGUUcaGGUGUCugCGCCa-- -3' miRNA: 3'- cCCGU--UCAGuaCCGCAGugGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 21890 | 0.67 | 0.625281 |
Target: 5'- uGGcCGGGUCcgugcccugccagAUGGCGacgUCACCGCCg-- -3' miRNA: 3'- cCC-GUUCAG-------------UACCGC---AGUGGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 23998 | 0.68 | 0.527687 |
Target: 5'- ---uGAGUCgcgcaGUGGCGUCAUCGCCg-- -3' miRNA: 3'- cccgUUCAG-----UACCGCAGUGGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 24440 | 0.67 | 0.593114 |
Target: 5'- -cGCGGGUgAUGGUGcccagCGgCGCCUUCu -3' miRNA: 3'- ccCGUUCAgUACCGCa----GUgGCGGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 25263 | 0.66 | 0.659715 |
Target: 5'- cGGGCGucGUCGUcGGCG-CGcCCGUCUa- -3' miRNA: 3'- -CCCGUu-CAGUA-CCGCaGU-GGCGGAag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 25559 | 0.67 | 0.593114 |
Target: 5'- cGGGCAGaagCAggcgGGCGcggACCGCCUUUu -3' miRNA: 3'- -CCCGUUca-GUa---CCGCag-UGGCGGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 25774 | 0.71 | 0.370319 |
Target: 5'- cGGGCAAGUCcgacgugcagGUGGgGaCGCCGCUg-- -3' miRNA: 3'- -CCCGUUCAG----------UACCgCaGUGGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 27929 | 0.68 | 0.549251 |
Target: 5'- cGGU-AGUCAcgcagGGCGUCAgCGCCg-- -3' miRNA: 3'- cCCGuUCAGUa----CCGCAGUgGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 28381 | 0.66 | 0.659715 |
Target: 5'- uGGCAGGaC-UGGcCGUCcuuACCGuCCUUCg -3' miRNA: 3'- cCCGUUCaGuACC-GCAG---UGGC-GGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 28533 | 0.7 | 0.435322 |
Target: 5'- aGGGCGAaUCcgcGGCGUCGUCGCCUa- -3' miRNA: 3'- -CCCGUUcAGua-CCGCAGUGGCGGAag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 30654 | 0.71 | 0.388205 |
Target: 5'- uGGCGAGUCGcugcggcagGGCGcUCugCGCCUc- -3' miRNA: 3'- cCCGUUCAGUa--------CCGC-AGugGCGGAag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 31482 | 0.69 | 0.471217 |
Target: 5'- aGGCAgugAGUCAUGGCGcagacaccugaacUACCGCCa-- -3' miRNA: 3'- cCCGU---UCAGUACCGCa------------GUGGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 32908 | 0.71 | 0.379192 |
Target: 5'- cGGGCGccacgcAGU--UGGaGUCGCUGCCUUCg -3' miRNA: 3'- -CCCGU------UCAguACCgCAGUGGCGGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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