miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11422 5' -55.5 NC_003085.1 + 48011 0.81 0.079304
Target:  5'- cGGcGCAGGUCAUGGCGUCuuCaCCUUCa -3'
miRNA:   3'- -CC-CGUUCAGUACCGCAGugGcGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 47248 0.66 0.670785
Target:  5'- uGGCGuuguGcUCA-GGCGUCACCGUCc-- -3'
miRNA:   3'- cCCGUu---C-AGUaCCGCAGUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 25263 0.66 0.659715
Target:  5'- cGGGCGucGUCGUcGGCG-CGcCCGUCUa- -3'
miRNA:   3'- -CCCGUu-CAGUA-CCGCaGU-GGCGGAag -5'
11422 5' -55.5 NC_003085.1 + 25559 0.67 0.593114
Target:  5'- cGGGCAGaagCAggcgGGCGcggACCGCCUUUu -3'
miRNA:   3'- -CCCGUUca-GUa---CCGCag-UGGCGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 16466 0.68 0.538432
Target:  5'- cGGCAGuGUCcgaccuGCG-CGCCGCCUUCc -3'
miRNA:   3'- cCCGUU-CAGuac---CGCaGUGGCGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 38150 0.68 0.527687
Target:  5'- uGGCGuuGGUgGUGGCGcUCcCCGCCg-- -3'
miRNA:   3'- cCCGU--UCAgUACCGC-AGuGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 23998 0.68 0.527687
Target:  5'- ---uGAGUCgcgcaGUGGCGUCAUCGCCg-- -3'
miRNA:   3'- cccgUUCAG-----UACCGCAGUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 35697 0.69 0.484545
Target:  5'- gGGGCAGGUUgagGGCGUCaacuuugGCgGCCa-- -3'
miRNA:   3'- -CCCGUUCAGua-CCGCAG-------UGgCGGaag -5'
11422 5' -55.5 NC_003085.1 + 31482 0.69 0.471217
Target:  5'- aGGCAgugAGUCAUGGCGcagacaccugaacUACCGCCa-- -3'
miRNA:   3'- cCCGU---UCAGUACCGCa------------GUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 28533 0.7 0.435322
Target:  5'- aGGGCGAaUCcgcGGCGUCGUCGCCUa- -3'
miRNA:   3'- -CCCGUUcAGua-CCGCAGUGGCGGAag -5'
11422 5' -55.5 NC_003085.1 + 7269 0.73 0.289591
Target:  5'- uGGGUgaagGAGaCGUGGCG-CACCGCCg-- -3'
miRNA:   3'- -CCCG----UUCaGUACCGCaGUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 43880 0.72 0.344565
Target:  5'- cGGGCAAGUaGUGGCGU-GCCgggauguggGUCUUCa -3'
miRNA:   3'- -CCCGUUCAgUACCGCAgUGG---------CGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 25774 0.71 0.370319
Target:  5'- cGGGCAAGUCcgacgugcagGUGGgGaCGCCGCUg-- -3'
miRNA:   3'- -CCCGUUCAG----------UACCgCaGUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 30654 0.71 0.388205
Target:  5'- uGGCGAGUCGcugcggcagGGCGcUCugCGCCUc- -3'
miRNA:   3'- cCCGUUCAGUa--------CCGC-AGugGCGGAag -5'
11422 5' -55.5 NC_003085.1 + 12341 0.7 0.397359
Target:  5'- uGGGCAAGggcacgcgccaCAUGGUGUCGCUguGCCg-- -3'
miRNA:   3'- -CCCGUUCa----------GUACCGCAGUGG--CGGaag -5'
11422 5' -55.5 NC_003085.1 + 34094 0.7 0.416075
Target:  5'- aGGCGGGUUcgGUGGCGUCAggGCCa-- -3'
miRNA:   3'- cCCGUUCAG--UACCGCAGUggCGGaag -5'
11422 5' -55.5 NC_003085.1 + 40924 1.12 0.000471
Target:  5'- gGGGCAAGUCAUGGCGUCACCGCCUUCg -3'
miRNA:   3'- -CCCGUUCAGUACCGCAGUGGCGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 38255 0.66 0.681817
Target:  5'- cGGuuGCAcGUCAUGGCGU-GCCuuCCUUCc -3'
miRNA:   3'- -CC--CGUuCAGUACCGCAgUGGc-GGAAG- -5'
11422 5' -55.5 NC_003085.1 + 708 0.66 0.670785
Target:  5'- gGGGCAAcuccgCGUGGCGccugacgCGCCGCUc-- -3'
miRNA:   3'- -CCCGUUca---GUACCGCa------GUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 28381 0.66 0.659715
Target:  5'- uGGCAGGaC-UGGcCGUCcuuACCGuCCUUCg -3'
miRNA:   3'- cCCGUUCaGuACC-GCAG---UGGC-GGAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.