miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11422 5' -55.5 NC_003085.1 + 35639 0.7 0.445136
Target:  5'- uGGGCGGcgucugcacGUCAUGGCGcCACCuCCa-- -3'
miRNA:   3'- -CCCGUU---------CAGUACCGCaGUGGcGGaag -5'
11422 5' -55.5 NC_003085.1 + 28533 0.7 0.435322
Target:  5'- aGGGCGAaUCcgcGGCGUCGUCGCCUa- -3'
miRNA:   3'- -CCCGUUcAGua-CCGCAGUGGCGGAag -5'
11422 5' -55.5 NC_003085.1 + 34094 0.7 0.416075
Target:  5'- aGGCGGGUUcgGUGGCGUCAggGCCa-- -3'
miRNA:   3'- cCCGUUCAG--UACCGCAGUggCGGaag -5'
11422 5' -55.5 NC_003085.1 + 12341 0.7 0.397359
Target:  5'- uGGGCAAGggcacgcgccaCAUGGUGUCGCUguGCCg-- -3'
miRNA:   3'- -CCCGUUCa----------GUACCGCAGUGG--CGGaag -5'
11422 5' -55.5 NC_003085.1 + 30654 0.71 0.388205
Target:  5'- uGGCGAGUCGcugcggcagGGCGcUCugCGCCUc- -3'
miRNA:   3'- cCCGUUCAGUa--------CCGC-AGugGCGGAag -5'
11422 5' -55.5 NC_003085.1 + 32908 0.71 0.379192
Target:  5'- cGGGCGccacgcAGU--UGGaGUCGCUGCCUUCg -3'
miRNA:   3'- -CCCGU------UCAguACCgCAGUGGCGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 25774 0.71 0.370319
Target:  5'- cGGGCAAGUCcgacgugcagGUGGgGaCGCCGCUg-- -3'
miRNA:   3'- -CCCGUUCAG----------UACCgCaGUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 33800 0.71 0.353005
Target:  5'- uGGGCAAccuucagcauGUCAaacgUGGCGUCGCgCuCCUUCu -3'
miRNA:   3'- -CCCGUU----------CAGU----ACCGCAGUG-GcGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 43880 0.72 0.344565
Target:  5'- cGGGCAAGUaGUGGCGU-GCCgggauguggGUCUUCa -3'
miRNA:   3'- -CCCGUUCAgUACCGCAgUGG---------CGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 43890 0.72 0.320123
Target:  5'- aGGGCGuAGaCGUGGCG-CACCGUCg-- -3'
miRNA:   3'- -CCCGU-UCaGUACCGCaGUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 7269 0.73 0.289591
Target:  5'- uGGGUgaagGAGaCGUGGCG-CACCGCCg-- -3'
miRNA:   3'- -CCCG----UUCaGUACCGCaGUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 47720 0.74 0.247502
Target:  5'- aGGGCGGGUCcgugacgAUGGCGUCuacugacuCUGCCUg- -3'
miRNA:   3'- -CCCGUUCAG-------UACCGCAGu-------GGCGGAag -5'
11422 5' -55.5 NC_003085.1 + 48011 0.81 0.079304
Target:  5'- cGGcGCAGGUCAUGGCGUCuuCaCCUUCa -3'
miRNA:   3'- -CC-CGUUCAGUACCGCAGugGcGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 40924 1.12 0.000471
Target:  5'- gGGGCAAGUCAUGGCGUCACCGCCUUCg -3'
miRNA:   3'- -CCCGUUCAGUACCGCAGUGGCGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.