miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11423 5' -59.5 NC_003085.1 + 48128 0.68 0.304174
Target:  5'- gUCGC-CAGCa--GUCUgGGCuGCCUCc -3'
miRNA:   3'- -AGCGcGUCGguaCAGAgCCGuCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 46844 0.66 0.432268
Target:  5'- gUUGCGaC-GCCAgcGUCUgGGCcuuGGCCUCg -3'
miRNA:   3'- -AGCGC-GuCGGUa-CAGAgCCG---UCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 44131 0.66 0.422788
Target:  5'- cUC-CGCGGCCAcGcgcuUCUCGGUcGCCUUc -3'
miRNA:   3'- -AGcGCGUCGGUaC----AGAGCCGuCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 42368 0.66 0.404209
Target:  5'- cUCGCGCAuGCC----CUCGGCGGCa-- -3'
miRNA:   3'- -AGCGCGU-CGGuacaGAGCCGUCGgag -5'
11423 5' -59.5 NC_003085.1 + 41398 0.71 0.218496
Target:  5'- -gGUGaCGGCCGUGUUgUCGG-AGCCUCg -3'
miRNA:   3'- agCGC-GUCGGUACAG-AGCCgUCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 40967 0.72 0.167405
Target:  5'- gCGCGUcguacuggcgGGCCAgcGcCUCGGCGGCCUUc -3'
miRNA:   3'- aGCGCG----------UCGGUa-CaGAGCCGUCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 40640 1.1 0.000244
Target:  5'- cUCGCGCAGCCAUGUCUCGGCAGCCUCa -3'
miRNA:   3'- -AGCGCGUCGGUACAGAGCCGUCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 38858 0.74 0.120409
Target:  5'- -gGUGCauuGGCCAUGUCUCagccugGGCuGCCUCg -3'
miRNA:   3'- agCGCG---UCGGUACAGAG------CCGuCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 38779 0.66 0.44187
Target:  5'- gCGCGCagGGCUgguGUGUCcagcacgcCGGCAGCCcCg -3'
miRNA:   3'- aGCGCG--UCGG---UACAGa-------GCCGUCGGaG- -5'
11423 5' -59.5 NC_003085.1 + 38415 0.67 0.398737
Target:  5'- -gGUGUAGcCCGucacaaguccgggccUGUCUCGGCGGUCg- -3'
miRNA:   3'- agCGCGUC-GGU---------------ACAGAGCCGUCGGag -5'
11423 5' -59.5 NC_003085.1 + 38208 0.66 0.451592
Target:  5'- cUCGgGCGGCgGUGgCUCGuGCAcUCUCg -3'
miRNA:   3'- -AGCgCGUCGgUACaGAGC-CGUcGGAG- -5'
11423 5' -59.5 NC_003085.1 + 37571 0.69 0.289474
Target:  5'- -aGCGCcuGGCCAUGaaCUCGGC-GCgCUCa -3'
miRNA:   3'- agCGCG--UCGGUACa-GAGCCGuCG-GAG- -5'
11423 5' -59.5 NC_003085.1 + 36965 0.68 0.304174
Target:  5'- cCGCGgGGCCAUGU--UGGCGccGCUUCg -3'
miRNA:   3'- aGCGCgUCGGUACAgaGCCGU--CGGAG- -5'
11423 5' -59.5 NC_003085.1 + 35432 0.72 0.171989
Target:  5'- gUCGCGCAGUag---CUCGGCAGuCCUa -3'
miRNA:   3'- -AGCGCGUCGguacaGAGCCGUC-GGAg -5'
11423 5' -59.5 NC_003085.1 + 35098 0.66 0.451592
Target:  5'- cCGCGCAGCCAgccgcuggcuucUGUCcuaaUGGCcguGCCa- -3'
miRNA:   3'- aGCGCGUCGGU------------ACAGa---GCCGu--CGGag -5'
11423 5' -59.5 NC_003085.1 + 34577 0.66 0.422788
Target:  5'- cCGCaCAGCCAgguugaaggUGUC-CGGCAGCa-- -3'
miRNA:   3'- aGCGcGUCGGU---------ACAGaGCCGUCGgag -5'
11423 5' -59.5 NC_003085.1 + 34192 0.7 0.242416
Target:  5'- -gGCGCGGCgGgugagCUCGGCcgcGGCCUCc -3'
miRNA:   3'- agCGCGUCGgUaca--GAGCCG---UCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 32240 0.66 0.432268
Target:  5'- -aGuCGCAGCgA-GUCUUGGUacagcgcccaGGCCUCg -3'
miRNA:   3'- agC-GCGUCGgUaCAGAGCCG----------UCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 30683 0.66 0.442837
Target:  5'- -aGCGaCAGCCGccuucgcuuUGUCcaucgcccgcuccagCGGCGGCUUCg -3'
miRNA:   3'- agCGC-GUCGGU---------ACAGa--------------GCCGUCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 29569 0.66 0.432268
Target:  5'- --aCGCGGac--GUCuUCGGCGGCCUCa -3'
miRNA:   3'- agcGCGUCgguaCAG-AGCCGUCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.