Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11423 | 5' | -59.5 | NC_003085.1 | + | 7506 | 0.66 | 0.422788 |
Target: 5'- -aGCGCAGgUgcGUCUCGGUGGCg-- -3' miRNA: 3'- agCGCGUCgGuaCAGAGCCGUCGgag -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 20105 | 0.72 | 0.18592 |
Target: 5'- cCGgGCGGCCAUGUCcUGGUugaagacGGCCUg -3' miRNA: 3'- aGCgCGUCGGUACAGaGCCG-------UCGGAg -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 40967 | 0.72 | 0.167405 |
Target: 5'- gCGCGUcguacuggcgGGCCAgcGcCUCGGCGGCCUUc -3' miRNA: 3'- aGCGCG----------UCGGUa-CaGAGCCGUCGGAG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 40640 | 1.1 | 0.000244 |
Target: 5'- cUCGCGCAGCCAUGUCUCGGCAGCCUCa -3' miRNA: 3'- -AGCGCGUCGGUACAGAGCCGUCGGAG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 8821 | 0.66 | 0.445745 |
Target: 5'- -gGCGCAGCCAgcGUCagGGCgacgaggacggcagcGGCCgUCa -3' miRNA: 3'- agCGCGUCGGUa-CAGagCCG---------------UCGG-AG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 30683 | 0.66 | 0.442837 |
Target: 5'- -aGCGaCAGCCGccuucgcuuUGUCcaucgcccgcuccagCGGCGGCUUCg -3' miRNA: 3'- agCGC-GUCGGU---------ACAGa--------------GCCGUCGGAG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 38779 | 0.66 | 0.44187 |
Target: 5'- gCGCGCagGGCUgguGUGUCcagcacgcCGGCAGCCcCg -3' miRNA: 3'- aGCGCG--UCGG---UACAGa-------GCCGUCGGaG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 32240 | 0.66 | 0.432268 |
Target: 5'- -aGuCGCAGCgA-GUCUUGGUacagcgcccaGGCCUCg -3' miRNA: 3'- agC-GCGUCGgUaCAGAGCCG----------UCGGAG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 44131 | 0.66 | 0.422788 |
Target: 5'- cUC-CGCGGCCAcGcgcuUCUCGGUcGCCUUc -3' miRNA: 3'- -AGcGCGUCGGUaC----AGAGCCGuCGGAG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 26537 | 0.7 | 0.236239 |
Target: 5'- gUCGaCGCGGCCucgGagggcuUCgcccCGGCAGCCUCc -3' miRNA: 3'- -AGC-GCGUCGGua-C------AGa---GCCGUCGGAG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 8340 | 0.69 | 0.282335 |
Target: 5'- aCGgGguGCCGcG-CUCGGCcugGGCCUCc -3' miRNA: 3'- aGCgCguCGGUaCaGAGCCG---UCGGAG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 37571 | 0.69 | 0.289474 |
Target: 5'- -aGCGCcuGGCCAUGaaCUCGGC-GCgCUCa -3' miRNA: 3'- agCGCG--UCGGUACa-GAGCCGuCG-GAG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 28616 | 0.66 | 0.404209 |
Target: 5'- cCGCaGCGGCgAg--CUCGGCGccggucGCCUCa -3' miRNA: 3'- aGCG-CGUCGgUacaGAGCCGU------CGGAG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 26723 | 0.69 | 0.261757 |
Target: 5'- -gGCGCgggugucggAGCCgaGUGcuUCUCGGCAGCCg- -3' miRNA: 3'- agCGCG---------UCGG--UAC--AGAGCCGUCGGag -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 38415 | 0.67 | 0.398737 |
Target: 5'- -gGUGUAGcCCGucacaaguccgggccUGUCUCGGCGGUCg- -3' miRNA: 3'- agCGCGUC-GGU---------------ACAGAGCCGUCGGag -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 27636 | 0.68 | 0.335276 |
Target: 5'- -aGCGCGaCUugAUGagCUCGGCGGCCUUg -3' miRNA: 3'- agCGCGUcGG--UACa-GAGCCGUCGGAG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 34192 | 0.7 | 0.242416 |
Target: 5'- -gGCGCGGCgGgugagCUCGGCcgcGGCCUCc -3' miRNA: 3'- agCGCGUCGgUaca--GAGCCG---UCGGAG- -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 35432 | 0.72 | 0.171989 |
Target: 5'- gUCGCGCAGUag---CUCGGCAGuCCUa -3' miRNA: 3'- -AGCGCGUCGguacaGAGCCGUC-GGAg -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 6386 | 0.67 | 0.351677 |
Target: 5'- gUCGUuucuuccuCGGCCGUGUCUCcacGCAGCCg- -3' miRNA: 3'- -AGCGc-------GUCGGUACAGAGc--CGUCGGag -5' |
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11423 | 5' | -59.5 | NC_003085.1 | + | 25135 | 0.68 | 0.338511 |
Target: 5'- -aGCGCcgcggagaugucguuGGCCAUGguggcCUCGGCGacauucauccgcGCCUCg -3' miRNA: 3'- agCGCG---------------UCGGUACa----GAGCCGU------------CGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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