miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11423 5' -59.5 NC_003085.1 + 6386 0.67 0.351677
Target:  5'- gUCGUuucuuccuCGGCCGUGUCUCcacGCAGCCg- -3'
miRNA:   3'- -AGCGc-------GUCGGUACAGAGc--CGUCGGag -5'
11423 5' -59.5 NC_003085.1 + 25135 0.68 0.338511
Target:  5'- -aGCGCcgcggagaugucguuGGCCAUGguggcCUCGGCGacauucauccgcGCCUCg -3'
miRNA:   3'- agCGCG---------------UCGGUACa----GAGCCGU------------CGGAG- -5'
11423 5' -59.5 NC_003085.1 + 27636 0.68 0.335276
Target:  5'- -aGCGCGaCUugAUGagCUCGGCGGCCUUg -3'
miRNA:   3'- agCGCGUcGG--UACa-GAGCCGUCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 2092 0.68 0.327288
Target:  5'- -aGCGCAGCCGccgcacCUCGGC-GCCaUCg -3'
miRNA:   3'- agCGCGUCGGUaca---GAGCCGuCGG-AG- -5'
11423 5' -59.5 NC_003085.1 + 48128 0.68 0.304174
Target:  5'- gUCGC-CAGCa--GUCUgGGCuGCCUCc -3'
miRNA:   3'- -AGCGcGUCGguaCAGAgCCGuCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 36965 0.68 0.304174
Target:  5'- cCGCGgGGCCAUGU--UGGCGccGCUUCg -3'
miRNA:   3'- aGCGCgUCGGUACAgaGCCGU--CGGAG- -5'
11423 5' -59.5 NC_003085.1 + 37571 0.69 0.289474
Target:  5'- -aGCGCcuGGCCAUGaaCUCGGC-GCgCUCa -3'
miRNA:   3'- agCGCG--UCGGUACa-GAGCCGuCG-GAG- -5'
11423 5' -59.5 NC_003085.1 + 8340 0.69 0.282335
Target:  5'- aCGgGguGCCGcG-CUCGGCcugGGCCUCc -3'
miRNA:   3'- aGCgCguCGGUaCaGAGCCG---UCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 26723 0.69 0.261757
Target:  5'- -gGCGCgggugucggAGCCgaGUGcuUCUCGGCAGCCg- -3'
miRNA:   3'- agCGCG---------UCGG--UAC--AGAGCCGUCGGag -5'
11423 5' -59.5 NC_003085.1 + 34192 0.7 0.242416
Target:  5'- -gGCGCGGCgGgugagCUCGGCcgcGGCCUCc -3'
miRNA:   3'- agCGCGUCGgUaca--GAGCCG---UCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 26537 0.7 0.236239
Target:  5'- gUCGaCGCGGCCucgGagggcuUCgcccCGGCAGCCUCc -3'
miRNA:   3'- -AGC-GCGUCGGua-C------AGa---GCCGUCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 41398 0.71 0.218496
Target:  5'- -gGUGaCGGCCGUGUUgUCGG-AGCCUCg -3'
miRNA:   3'- agCGC-GUCGGUACAG-AGCCgUCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 20105 0.72 0.18592
Target:  5'- cCGgGCGGCCAUGUCcUGGUugaagacGGCCUg -3'
miRNA:   3'- aGCgCGUCGGUACAGaGCCG-------UCGGAg -5'
11423 5' -59.5 NC_003085.1 + 35432 0.72 0.171989
Target:  5'- gUCGCGCAGUag---CUCGGCAGuCCUa -3'
miRNA:   3'- -AGCGCGUCGguacaGAGCCGUC-GGAg -5'
11423 5' -59.5 NC_003085.1 + 40967 0.72 0.167405
Target:  5'- gCGCGUcguacuggcgGGCCAgcGcCUCGGCGGCCUUc -3'
miRNA:   3'- aGCGCG----------UCGGUa-CaGAGCCGUCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 38858 0.74 0.120409
Target:  5'- -gGUGCauuGGCCAUGUCUCagccugGGCuGCCUCg -3'
miRNA:   3'- agCGCG---UCGGUACAGAG------CCGuCGGAG- -5'
11423 5' -59.5 NC_003085.1 + 40640 1.1 0.000244
Target:  5'- cUCGCGCAGCCAUGUCUCGGCAGCCUCa -3'
miRNA:   3'- -AGCGCGUCGGUACAGAGCCGUCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.