Results 41 - 60 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11424 | 5' | -60.7 | NC_003085.1 | + | 23223 | 0.75 | 0.107716 |
Target: 5'- cGGGCUGcuccagacGGCCGCCGCGCUUcgcaccgcGCCGCCc -3' miRNA: 3'- cCCCGGC--------UUGGUGGUGUGGA--------CGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 1507 | 0.75 | 0.104816 |
Target: 5'- -cGGCCGGugCGCCuCACg-GCCGCCa -3' miRNA: 3'- ccCCGGCUugGUGGuGUGgaCGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 6706 | 0.76 | 0.088907 |
Target: 5'- -cGGCCGcccugCACCGCACCcaUGCCGCCg -3' miRNA: 3'- ccCCGGCuug--GUGGUGUGG--ACGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 3565 | 0.77 | 0.07743 |
Target: 5'- aGGcGGCCGGGCgGCaagCGCGCCUcGCUGCCg -3' miRNA: 3'- -CC-CCGGCUUGgUG---GUGUGGA-CGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 39947 | 0.79 | 0.056971 |
Target: 5'- aGGGaGCCGAugacCCGCCGCGC--GCCGCCa -3' miRNA: 3'- -CCC-CGGCUu---GGUGGUGUGgaCGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 23339 | 0.71 | 0.193569 |
Target: 5'- -uGGCCG-GCCAa-GCGCCgccgGCCGCCg -3' miRNA: 3'- ccCCGGCuUGGUggUGUGGa---CGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 47591 | 0.71 | 0.193569 |
Target: 5'- uGGGCCGAugagcGCaagacggaGCCGCGCCUGUuucuuagaCGCCu -3' miRNA: 3'- cCCCGGCU-----UGg-------UGGUGUGGACG--------GCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 2307 | 0.69 | 0.289294 |
Target: 5'- cGGcGCUGGcCUGCCucgcCACCgGCCGCCg -3' miRNA: 3'- cCC-CGGCUuGGUGGu---GUGGaCGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 24863 | 0.69 | 0.288594 |
Target: 5'- uGGGCCGGcaaccucACCugCagcgGCGCCcaguuccaggGCCGCCu -3' miRNA: 3'- cCCCGGCU-------UGGugG----UGUGGa---------CGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 15272 | 0.69 | 0.274868 |
Target: 5'- -cGGCCGAGcucacCCGCCGCGCCcgcgucaUGCUgGCCc -3' miRNA: 3'- ccCCGGCUU-----GGUGGUGUGG-------ACGG-CGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 43973 | 0.69 | 0.268864 |
Target: 5'- -cGGCCcGGCC-CCACGCCgcguUGuCCGCCu -3' miRNA: 3'- ccCCGGcUUGGuGGUGUGG----AC-GGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 27016 | 0.69 | 0.268864 |
Target: 5'- cGGGCCuugguguGCCugCGCGCUcgacGCUGCCa -3' miRNA: 3'- cCCCGGcu-----UGGugGUGUGGa---CGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 41919 | 0.7 | 0.258452 |
Target: 5'- cGGGCgUGuAGCCcgugcccacggcaugGCCcCACUUGCCGCCa -3' miRNA: 3'- cCCCG-GC-UUGG---------------UGGuGUGGACGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 39042 | 0.7 | 0.255901 |
Target: 5'- uGGG-CGAGCgCugCGCguACCUGCUGCUg -3' miRNA: 3'- cCCCgGCUUG-GugGUG--UGGACGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 26302 | 0.7 | 0.243455 |
Target: 5'- cGGGCUG-GCCaACUACGagaUGCCGCCc -3' miRNA: 3'- cCCCGGCuUGG-UGGUGUgg-ACGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 11555 | 0.7 | 0.231516 |
Target: 5'- cGGGGCC-AugCGCCAacgcaccguCCUGCCcgcGCCu -3' miRNA: 3'- -CCCCGGcUugGUGGUgu-------GGACGG---CGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 15188 | 0.71 | 0.214536 |
Target: 5'- -cGGCUGAGCCGgUGCGCCagcGCCGCg -3' miRNA: 3'- ccCCGGCUUGGUgGUGUGGa--CGGCGg -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 14352 | 0.71 | 0.214536 |
Target: 5'- aGGGGCCGGACCugC-CACUcaacggggUGaCGUCg -3' miRNA: 3'- -CCCCGGCUUGGugGuGUGG--------ACgGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 12742 | 0.71 | 0.214536 |
Target: 5'- aGGGGCCGGAgguggugcgugUCgaggugGCCugGggugaugccCCUGCCGCCg -3' miRNA: 3'- -CCCCGGCUU-----------GG------UGGugU---------GGACGGCGG- -5' |
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11424 | 5' | -60.7 | NC_003085.1 | + | 24373 | 0.71 | 0.198125 |
Target: 5'- uGGcGGCCGGGCCAUCAaugGCCUggacgggGCCGUg -3' miRNA: 3'- -CC-CCGGCUUGGUGGUg--UGGA-------CGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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