miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11425 3' -55.2 NC_003085.1 + 27989 0.69 0.478811
Target:  5'- cGC-CGcGCAGgCCgcCCUUGUCGGCg -3'
miRNA:   3'- -UGaGUuCGUCgGGaaGGAACAGCCGg -5'
11425 3' -55.2 NC_003085.1 + 37793 0.69 0.478811
Target:  5'- aACUCA--CAGCCCcaCCUccUCGGCCa -3'
miRNA:   3'- -UGAGUucGUCGGGaaGGAacAGCCGG- -5'
11425 3' -55.2 NC_003085.1 + 656 0.69 0.468538
Target:  5'- cGCUCGAGCAccGCCCggaCgucGcCGGCCa -3'
miRNA:   3'- -UGAGUUCGU--CGGGaagGaa-CaGCCGG- -5'
11425 3' -55.2 NC_003085.1 + 1494 0.7 0.448338
Target:  5'- uGCUCGAcGCGGCCCgUCCggcgcUCGGgCa -3'
miRNA:   3'- -UGAGUU-CGUCGGGaAGGaac--AGCCgG- -5'
11425 3' -55.2 NC_003085.1 + 47067 0.71 0.40005
Target:  5'- aGCUC-GGCGGUg--UCCaUGUCGGCCa -3'
miRNA:   3'- -UGAGuUCGUCGggaAGGaACAGCCGG- -5'
11425 3' -55.2 NC_003085.1 + 18483 0.71 0.390797
Target:  5'- aACUC--GCAGCCCccgUCCUcaaggCGGCCa -3'
miRNA:   3'- -UGAGuuCGUCGGGa--AGGAaca--GCCGG- -5'
11425 3' -55.2 NC_003085.1 + 16240 0.73 0.283771
Target:  5'- gGCUCAuGgAGCCCggCCgagUGccUCGGCCa -3'
miRNA:   3'- -UGAGUuCgUCGGGaaGGa--AC--AGCCGG- -5'
11425 3' -55.2 NC_003085.1 + 40090 1.11 0.000562
Target:  5'- uACUCAAGCAGCCCUUCCUUGUCGGCCu -3'
miRNA:   3'- -UGAGUUCGUCGGGAAGGAACAGCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.