miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11426 3' -54.2 NC_003085.1 + 46134 0.66 0.746602
Target:  5'- cGCAacUGGGGcGUGUCGAAGUGCcUGa -3'
miRNA:   3'- -CGUcaGCCUCaCGCAGCUUCGCGaAC- -5'
11426 3' -54.2 NC_003085.1 + 39592 0.66 0.746602
Target:  5'- gGCaAGcUGGAGcGCGUCGcgGAGCGCa-- -3'
miRNA:   3'- -CG-UCaGCCUCaCGCAGC--UUCGCGaac -5'
11426 3' -54.2 NC_003085.1 + 5516 0.66 0.732782
Target:  5'- cGC-GUCGGcacgugcucgcacuGGUGCG-CGAAGUGCg-- -3'
miRNA:   3'- -CGuCAGCC--------------UCACGCaGCUUCGCGaac -5'
11426 3' -54.2 NC_003085.1 + 26084 0.66 0.725266
Target:  5'- aGgAGUUGGuugGgGUCGAAGUGCUg- -3'
miRNA:   3'- -CgUCAGCCucaCgCAGCUUCGCGAac -5'
11426 3' -54.2 NC_003085.1 + 46118 0.67 0.703547
Target:  5'- gGC-GUCGGGGaGCGUCGucuGUGCg-- -3'
miRNA:   3'- -CGuCAGCCUCaCGCAGCuu-CGCGaac -5'
11426 3' -54.2 NC_003085.1 + 47368 0.67 0.681542
Target:  5'- aGCuGUCGaggauGAGUGCGUCGuagccuucGCGCUc- -3'
miRNA:   3'- -CGuCAGC-----CUCACGCAGCuu------CGCGAac -5'
11426 3' -54.2 NC_003085.1 + 4758 0.68 0.637039
Target:  5'- cGCGGUUGGAGUGaCGacuuUCGGcucucgGGUGCUg- -3'
miRNA:   3'- -CGUCAGCCUCAC-GC----AGCU------UCGCGAac -5'
11426 3' -54.2 NC_003085.1 + 42570 0.69 0.592458
Target:  5'- aGCGGUCGGGGaGCGuaUCGggGCu---- -3'
miRNA:   3'- -CGUCAGCCUCaCGC--AGCuuCGcgaac -5'
11426 3' -54.2 NC_003085.1 + 24537 0.69 0.559348
Target:  5'- uGUGGUCGcGGUGCGUgCGcGGCGCg-- -3'
miRNA:   3'- -CGUCAGCcUCACGCA-GCuUCGCGaac -5'
11426 3' -54.2 NC_003085.1 + 16401 0.71 0.443956
Target:  5'- aGguGUCGaGGGcGCGUUGAAGCGUc-- -3'
miRNA:   3'- -CguCAGC-CUCaCGCAGCUUCGCGaac -5'
11426 3' -54.2 NC_003085.1 + 547 0.73 0.351623
Target:  5'- gGCAGccagggCGGGGUGgcCGUCGAAGUGCa-- -3'
miRNA:   3'- -CGUCa-----GCCUCAC--GCAGCUUCGCGaac -5'
11426 3' -54.2 NC_003085.1 + 40543 0.79 0.143074
Target:  5'- uGCAcuUCGGAG-GCGUCGAGGCGCa-- -3'
miRNA:   3'- -CGUc-AGCCUCaCGCAGCUUCGCGaac -5'
11426 3' -54.2 NC_003085.1 + 39680 1.1 0.001001
Target:  5'- uGCAGUCGGAGUGCGUCGAAGCGCUUGu -3'
miRNA:   3'- -CGUCAGCCUCACGCAGCUUCGCGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.