miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11426 5' -57.9 NC_003085.1 + 45494 0.66 0.535249
Target:  5'- -aCAAGCGCGgCCgucuGGCUCCAUccccgggccgcGACa -3'
miRNA:   3'- agGUUCGCGCgGGac--CUGAGGUA-----------CUG- -5'
11426 5' -57.9 NC_003085.1 + 41130 0.66 0.534185
Target:  5'- cUCCAcGCGCccgaugaggaaguGCCCucggUGGACUUCguagGUGACg -3'
miRNA:   3'- -AGGUuCGCG-------------CGGG----ACCUGAGG----UACUG- -5'
11426 5' -57.9 NC_003085.1 + 26708 0.66 0.52464
Target:  5'- cUCGAGCGCGCgCaGGGCg--GUGACg -3'
miRNA:   3'- aGGUUCGCGCGgGaCCUGaggUACUG- -5'
11426 5' -57.9 NC_003085.1 + 30050 0.66 0.52464
Target:  5'- aCCAgguGGCGcCGCCCUGGGC-CUugcUGGg -3'
miRNA:   3'- aGGU---UCGC-GCGGGACCUGaGGu--ACUg -5'
11426 5' -57.9 NC_003085.1 + 45215 0.66 0.514112
Target:  5'- gCCAAGCGCGCgaagcgCUGcGGC-CCGgcUGACg -3'
miRNA:   3'- aGGUUCGCGCGg-----GAC-CUGaGGU--ACUG- -5'
11426 5' -57.9 NC_003085.1 + 30411 0.66 0.503672
Target:  5'- cUCCGccGCGCGCCgC-GGAauCUCCAcGACg -3'
miRNA:   3'- -AGGUu-CGCGCGG-GaCCU--GAGGUaCUG- -5'
11426 5' -57.9 NC_003085.1 + 45600 0.66 0.493324
Target:  5'- -gCGGGCGCGCCgUcGACgcgCCGUGGu -3'
miRNA:   3'- agGUUCGCGCGGgAcCUGa--GGUACUg -5'
11426 5' -57.9 NC_003085.1 + 30482 0.67 0.472929
Target:  5'- aCCuGGaCGCGaCgCCUGGACUCgAcGACa -3'
miRNA:   3'- aGGuUC-GCGC-G-GGACCUGAGgUaCUG- -5'
11426 5' -57.9 NC_003085.1 + 8428 0.67 0.452969
Target:  5'- gCCAAGC-CGCCCaggaGGACgCCAgcGACg -3'
miRNA:   3'- aGGUUCGcGCGGGa---CCUGaGGUa-CUG- -5'
11426 5' -57.9 NC_003085.1 + 21554 0.67 0.452969
Target:  5'- aCCAcGCGCgGCCCgcgaGGg--CCAUGACg -3'
miRNA:   3'- aGGUuCGCG-CGGGa---CCugaGGUACUG- -5'
11426 5' -57.9 NC_003085.1 + 34473 0.67 0.452968
Target:  5'- cUCUggGaCGCuGCCCUGGGgcgcCUCCcagGGCa -3'
miRNA:   3'- -AGGuuC-GCG-CGGGACCU----GAGGua-CUG- -5'
11426 5' -57.9 NC_003085.1 + 33081 0.67 0.433475
Target:  5'- gCCAGGaCGUGCCCgcggaGGcucACUCCuggGUGGCg -3'
miRNA:   3'- aGGUUC-GCGCGGGa----CC---UGAGG---UACUG- -5'
11426 5' -57.9 NC_003085.1 + 39328 0.68 0.423913
Target:  5'- aCCcuGCGCGgCCUGGAuacCUgCGUGAg -3'
miRNA:   3'- aGGuuCGCGCgGGACCU---GAgGUACUg -5'
11426 5' -57.9 NC_003085.1 + 35983 0.68 0.405174
Target:  5'- gCCAGGcCGaCGCCCaGGaaacGCUCCGcGACa -3'
miRNA:   3'- aGGUUC-GC-GCGGGaCC----UGAGGUaCUG- -5'
11426 5' -57.9 NC_003085.1 + 2748 0.7 0.304328
Target:  5'- --aAGGCGCuGCCCaaGGACUCCGcUGGCc -3'
miRNA:   3'- aggUUCGCG-CGGGa-CCUGAGGU-ACUG- -5'
11426 5' -57.9 NC_003085.1 + 33757 0.7 0.282331
Target:  5'- gUCCAugucguugAGCGUgucGCCCaUGuGCUCCAUGGCg -3'
miRNA:   3'- -AGGU--------UCGCG---CGGG-ACcUGAGGUACUG- -5'
11426 5' -57.9 NC_003085.1 + 28526 0.7 0.282331
Target:  5'- gCCAGaCGCGCgCgGGGCUCCAUagGACg -3'
miRNA:   3'- aGGUUcGCGCGgGaCCUGAGGUA--CUG- -5'
11426 5' -57.9 NC_003085.1 + 17935 0.72 0.242148
Target:  5'- cCCAGcGCgGCGCUCUGGGCUCUGcuggGGCa -3'
miRNA:   3'- aGGUU-CG-CGCGGGACCUGAGGUa---CUG- -5'
11426 5' -57.9 NC_003085.1 + 29988 0.72 0.242148
Target:  5'- aUCCAccggauggggAGCG-GCCCUGGGCggCCuUGGCg -3'
miRNA:   3'- -AGGU----------UCGCgCGGGACCUGa-GGuACUG- -5'
11426 5' -57.9 NC_003085.1 + 25235 0.74 0.171365
Target:  5'- aCC-GGCGcCGCCCUGGugcGCUCCGcGGCg -3'
miRNA:   3'- aGGuUCGC-GCGGGACC---UGAGGUaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.