Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11427 | 5' | -53.8 | NC_003085.1 | + | 42453 | 0.68 | 0.674262 |
Target: 5'- aGGGAGCgguCCGUgucgaggCCCGUGGCguCAUCUCCg -3' miRNA: 3'- -CCCUCG---GGUAa------GGGUGUUG--GUAGAGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 1115 | 0.68 | 0.629764 |
Target: 5'- -cGAGCCCG-UCCCGauguCCAUCggCCg -3' miRNA: 3'- ccCUCGGGUaAGGGUguu-GGUAGa-GG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 13664 | 0.69 | 0.617505 |
Target: 5'- cGGGAGCgCAacCCCAUggacaaggacaccGGCCGUCgcgCCg -3' miRNA: 3'- -CCCUCGgGUaaGGGUG-------------UUGGUAGa--GG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 19520 | 0.69 | 0.596374 |
Target: 5'- uGGaGGGCCUGUg-CCAUGGCCAUCUgCu -3' miRNA: 3'- -CC-CUCGGGUAagGGUGUUGGUAGAgG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 42121 | 0.69 | 0.596374 |
Target: 5'- aGGGGCgCGUguagCCCGCGuccucaGCCGcCUCCg -3' miRNA: 3'- cCCUCGgGUAa---GGGUGU------UGGUaGAGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 8294 | 0.69 | 0.595265 |
Target: 5'- uGGAGCCCcuugCCCAggUAGCCGUUggaggcaUCCg -3' miRNA: 3'- cCCUCGGGuaa-GGGU--GUUGGUAG-------AGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 44391 | 0.7 | 0.563263 |
Target: 5'- cGGGcuGUUCGUcaUCCCGCGccgcACCAUCUCa -3' miRNA: 3'- -CCCu-CGGGUA--AGGGUGU----UGGUAGAGg -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 8899 | 0.7 | 0.541459 |
Target: 5'- uGGGGUCCA---CCGCGGCCGUCaCCg -3' miRNA: 3'- cCCUCGGGUaagGGUGUUGGUAGaGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 39947 | 0.7 | 0.530661 |
Target: 5'- aGGGAGCCgAUgacccgCCgCGCGccGCCAUCgucaCCg -3' miRNA: 3'- -CCCUCGGgUAa-----GG-GUGU--UGGUAGa---GG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 37273 | 0.71 | 0.508254 |
Target: 5'- cGGGAagcgcucgacgucGCCCAccuggaaCCACGGCCA-CUCCa -3' miRNA: 3'- -CCCU-------------CGGGUaag----GGUGUUGGUaGAGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 7422 | 0.71 | 0.488331 |
Target: 5'- uGGGGCCC--UCCCGgGaagacGCgCGUCUCCa -3' miRNA: 3'- cCCUCGGGuaAGGGUgU-----UG-GUAGAGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 49019 | 0.71 | 0.477994 |
Target: 5'- cGGGuAGUCC-UUCaCCGCGACCAgcgacUCUUCg -3' miRNA: 3'- -CCC-UCGGGuAAG-GGUGUUGGU-----AGAGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 35952 | 0.71 | 0.457652 |
Target: 5'- cGGAGCUucucgaCGUUCgCCGCuGCCAcgUCUCCg -3' miRNA: 3'- cCCUCGG------GUAAG-GGUGuUGGU--AGAGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 39147 | 0.72 | 0.447655 |
Target: 5'- cGGGGGCCgCAUcgcauucgUUCCACAGCCGga-CCa -3' miRNA: 3'- -CCCUCGG-GUA--------AGGGUGUUGGUagaGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 49358 | 0.72 | 0.447655 |
Target: 5'- uGGGGGCCCGccgCCCGuCcGCCGUC-CUg -3' miRNA: 3'- -CCCUCGGGUaa-GGGU-GuUGGUAGaGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 47684 | 0.72 | 0.40893 |
Target: 5'- -cGGGCCaccugUCCCACuccaacGCCGUCUCCc -3' miRNA: 3'- ccCUCGGgua--AGGGUGu-----UGGUAGAGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 23948 | 0.73 | 0.390367 |
Target: 5'- aGGGGGCUCAUgcccuuUCCCAa---UAUCUCCg -3' miRNA: 3'- -CCCUCGGGUA------AGGGUguugGUAGAGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 26676 | 0.77 | 0.218467 |
Target: 5'- cGGGAGCggCCGUUgCCGCuGCCGUCgCCa -3' miRNA: 3'- -CCCUCG--GGUAAgGGUGuUGGUAGaGG- -5' |
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11427 | 5' | -53.8 | NC_003085.1 | + | 39517 | 1.15 | 0.000465 |
Target: 5'- cGGGAGCCCAUUCCCACAACCAUCUCCa -3' miRNA: 3'- -CCCUCGGGUAAGGGUGUUGGUAGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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