miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11428 5' -65.3 NC_003085.1 + 3688 0.66 0.252645
Target:  5'- gCGCGGcgaguccugacGCCGCGUcCGGuGCUGGUGg- -3'
miRNA:   3'- -GCGCC-----------CGGCGCGcGUCcCGACCACac -5'
11428 5' -65.3 NC_003085.1 + 17982 0.66 0.228939
Target:  5'- gCGCGGGCCGCaGgGCAcGGaGCUGcGa--- -3'
miRNA:   3'- -GCGCCCGGCG-CgCGU-CC-CGAC-Cacac -5'
11428 5' -65.3 NC_003085.1 + 12417 0.68 0.177819
Target:  5'- gGCgGGGCCGCuGCGCuccgaGGaGGCUGuGUcGUGa -3'
miRNA:   3'- gCG-CCCGGCG-CGCG-----UC-CCGAC-CA-CAC- -5'
11428 5' -65.3 NC_003085.1 + 25137 0.68 0.176454
Target:  5'- aCGCGGGCaccacgaaGCGCGguGuGGCcggcgaccguggccUGGUGg- -3'
miRNA:   3'- -GCGCCCGg-------CGCGCguC-CCG--------------ACCACac -5'
11428 5' -65.3 NC_003085.1 + 12017 0.69 0.148319
Target:  5'- uGCGGuGgCGgGCGCGGGGUUGGc--- -3'
miRNA:   3'- gCGCC-CgGCgCGCGUCCCGACCacac -5'
11428 5' -65.3 NC_003085.1 + 14906 0.69 0.144488
Target:  5'- uGCGGcGCaCGCGgGCc-GGCUGGUGg- -3'
miRNA:   3'- gCGCC-CG-GCGCgCGucCCGACCACac -5'
11428 5' -65.3 NC_003085.1 + 27916 0.69 0.140747
Target:  5'- uCGCGGGCCGCGCGU--GGUUccGGUa-- -3'
miRNA:   3'- -GCGCCCGGCGCGCGucCCGA--CCAcac -5'
11428 5' -65.3 NC_003085.1 + 17236 0.69 0.140747
Target:  5'- aCGCGGcGCCcCGUGCucuGGGC-GGUGUu -3'
miRNA:   3'- -GCGCC-CGGcGCGCGu--CCCGaCCACAc -5'
11428 5' -65.3 NC_003085.1 + 40675 0.69 0.139276
Target:  5'- uCGCGGaGCCGCcgGCGCAGGGggacgacguccgGGUGcUGg -3'
miRNA:   3'- -GCGCC-CGGCG--CGCGUCCCga----------CCAC-AC- -5'
11428 5' -65.3 NC_003085.1 + 26388 0.69 0.130051
Target:  5'- -uCGGGCCGCugaGCGCccAGGGCUGGc--- -3'
miRNA:   3'- gcGCCCGGCG---CGCG--UCCCGACCacac -5'
11428 5' -65.3 NC_003085.1 + 38770 1.07 0.000146
Target:  5'- uCGCGGGCCGCGCGCAGGGCUGGUGUGu -3'
miRNA:   3'- -GCGCCCGGCGCGCGUCCCGACCACAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.