Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11429 | 5' | -52.5 | NC_003085.1 | + | 46279 | 0.66 | 0.803617 |
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Target: 5'- uGAGUCGUCGAGUGCC--CAUGUcaGCc -3' miRNA: 3'- gUUCAGUAGCUCGUGGuuGUGCG--CGu -5' |
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| 11429 | 5' | -52.5 | NC_003085.1 | + | 46317 | 0.73 | 0.423647 |
|
Target: 5'- gAAGUCAgCGAGCGCCcACucuucgACGCGCc -3' miRNA: 3'- gUUCAGUaGCUCGUGGuUG------UGCGCGu -5' |
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| 11429 | 5' | -52.5 | NC_003085.1 | + | 46719 | 0.72 | 0.464014 |
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Target: 5'- gGAGUCcUUGGGCagcGCCuuCGCGCGCGc -3' miRNA: 3'- gUUCAGuAGCUCG---UGGuuGUGCGCGU- -5' |
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| 11429 | 5' | -52.5 | NC_003085.1 | + | 46908 | 0.69 | 0.651945 |
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Target: 5'- aAGGUCGUCaccgcGGCAggcggcacagguUCGGCGCGCGCAg -3' miRNA: 3'- gUUCAGUAGc----UCGU------------GGUUGUGCGCGU- -5' |
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| 11429 | 5' | -52.5 | NC_003085.1 | + | 47707 | 0.76 | 0.300431 |
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Target: 5'- gCGAGUCGUCGAcugcuGCGCCugcuGACGgGCGCGg -3' miRNA: 3'- -GUUCAGUAGCU-----CGUGG----UUGUgCGCGU- -5' |
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| 11429 | 5' | -52.5 | NC_003085.1 | + | 47866 | 0.7 | 0.572516 |
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Target: 5'- gAGGUCGagCGAGaCGUCAGCGCGUGCGg -3' miRNA: 3'- gUUCAGUa-GCUC-GUGGUUGUGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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