miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11430 5' -55 NC_003085.1 + 34199 0.65 0.732513
Target:  5'- -cGGGUgaGCUCGGcCGCGGcCUCCgGGu -3'
miRNA:   3'- ucUUCAg-UGAGCC-GCGUCuGAGGaCC- -5'
11430 5' -55 NC_003085.1 + 19311 0.66 0.711067
Target:  5'- cGGggGUgACgucCuGCGUGGGCUgCUGGg -3'
miRNA:   3'- -UCuuCAgUGa--GcCGCGUCUGAgGACC- -5'
11430 5' -55 NC_003085.1 + 16920 0.66 0.696953
Target:  5'- ---uGUCGCUgagcuuguucgcgaCGGUGCGGuACUCCUGcGg -3'
miRNA:   3'- ucuuCAGUGA--------------GCCGCGUC-UGAGGAC-C- -5'
11430 5' -55 NC_003085.1 + 27681 0.66 0.678337
Target:  5'- cGAAGgugaACUCGGCGUucg--CCUGGg -3'
miRNA:   3'- uCUUCag--UGAGCCGCGucugaGGACC- -5'
11430 5' -55 NC_003085.1 + 33185 0.67 0.656276
Target:  5'- cAGuAGUCGCgccaGuaGCGGGCgUCCUGGa -3'
miRNA:   3'- -UCuUCAGUGag--CcgCGUCUG-AGGACC- -5'
11430 5' -55 NC_003085.1 + 12124 0.67 0.634124
Target:  5'- cGGAaaAGUCAC-CGGUGCcuGCUCCUc- -3'
miRNA:   3'- -UCU--UCAGUGaGCCGCGucUGAGGAcc -5'
11430 5' -55 NC_003085.1 + 43353 0.68 0.609751
Target:  5'- aGGAGGUCcaGgUCGGCauGCAGGCgacggaggacucCCUGGg -3'
miRNA:   3'- -UCUUCAG--UgAGCCG--CGUCUGa-----------GGACC- -5'
11430 5' -55 NC_003085.1 + 20613 0.68 0.599802
Target:  5'- cGGAAGUCGggCGGCGCGGGugcuugcUUCCccaUGGc -3'
miRNA:   3'- -UCUUCAGUgaGCCGCGUCU-------GAGG---ACC- -5'
11430 5' -55 NC_003085.1 + 41025 0.68 0.557033
Target:  5'- uGGgcGUCGCU-GGCGUc--CUCCUGGg -3'
miRNA:   3'- -UCuuCAGUGAgCCGCGucuGAGGACC- -5'
11430 5' -55 NC_003085.1 + 13466 0.69 0.546196
Target:  5'- cGcGGUCAUcgCGGCGCGG-CUcgaCCUGGa -3'
miRNA:   3'- uCuUCAGUGa-GCCGCGUCuGA---GGACC- -5'
11430 5' -55 NC_003085.1 + 31488 0.69 0.535428
Target:  5'- -uGAGUCA--UGGCGCAGACaCCUGa -3'
miRNA:   3'- ucUUCAGUgaGCCGCGUCUGaGGACc -5'
11430 5' -55 NC_003085.1 + 24533 0.7 0.482847
Target:  5'- aAGuuguGGUCGCggugcgugcgCGGCGCGGACaugCCUGa -3'
miRNA:   3'- -UCu---UCAGUGa---------GCCGCGUCUGa--GGACc -5'
11430 5' -55 NC_003085.1 + 9179 0.7 0.472625
Target:  5'- -uGAGUCugUggguCGGCGCGGguACUCCUGc -3'
miRNA:   3'- ucUUCAGugA----GCCGCGUC--UGAGGACc -5'
11430 5' -55 NC_003085.1 + 36127 0.7 0.462514
Target:  5'- aGGAAGacCGCUCGGUacaugGCGGGCUCgCUGa -3'
miRNA:   3'- -UCUUCa-GUGAGCCG-----CGUCUGAG-GACc -5'
11430 5' -55 NC_003085.1 + 24560 0.7 0.462514
Target:  5'- cGcuGUUACUCGGCGaugAGGCggcCCUGGa -3'
miRNA:   3'- uCuuCAGUGAGCCGCg--UCUGa--GGACC- -5'
11430 5' -55 NC_003085.1 + 23075 0.7 0.441658
Target:  5'- aGGAAGUCACUCGcagggaGCGCgagguacAGACugUCCUGa -3'
miRNA:   3'- -UCUUCAGUGAGC------CGCG-------UCUG--AGGACc -5'
11430 5' -55 NC_003085.1 + 7641 0.71 0.423255
Target:  5'- uGGGAG-CGCaucaaCGGCGCcGAgUCCUGGg -3'
miRNA:   3'- -UCUUCaGUGa----GCCGCGuCUgAGGACC- -5'
11430 5' -55 NC_003085.1 + 20809 0.72 0.342711
Target:  5'- aGGAGGUUGC-CGGgGUGGACgccaUCCUGGa -3'
miRNA:   3'- -UCUUCAGUGaGCCgCGUCUG----AGGACC- -5'
11430 5' -55 NC_003085.1 + 18100 0.73 0.334473
Target:  5'- cGggGUCGagcuucuugUCGGCGCGGGCgggacggccggCCUGGg -3'
miRNA:   3'- uCuuCAGUg--------AGCCGCGUCUGa----------GGACC- -5'
11430 5' -55 NC_003085.1 + 33219 0.74 0.288111
Target:  5'- cGAGG-CACUCGGC-CGGGCUCCa-- -3'
miRNA:   3'- uCUUCaGUGAGCCGcGUCUGAGGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.