miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 20821 0.67 0.21283
Target:  5'- gGGUgGACGCcauCCUGGAugagGCGacCGGCGCCg -3'
miRNA:   3'- -UCGgCUGUGc--GGGCCU----CGC--GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 42048 0.67 0.21283
Target:  5'- cAGCCGgguaGCAgucCGCgCGGAGCGgGGUgaagacgauGCCg -3'
miRNA:   3'- -UCGGC----UGU---GCGgGCCUCGCgCCG---------CGG- -5'
11432 3' -64.9 NC_003085.1 + 32219 0.67 0.229267
Target:  5'- cGCa-ACAcCGCCCaGAGCacGgGGCGCCg -3'
miRNA:   3'- uCGgcUGU-GCGGGcCUCG--CgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 10617 0.67 0.229267
Target:  5'- uGGCCaauGCACcUCCGGcuguGUGgGGCGCCg -3'
miRNA:   3'- -UCGGc--UGUGcGGGCCu---CGCgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 3421 0.67 0.229267
Target:  5'- cAGCCGuauCGCGCCUgcuGGAGaacuucgaGCaGGCGaCCa -3'
miRNA:   3'- -UCGGCu--GUGCGGG---CCUCg-------CG-CCGC-GG- -5'
11432 3' -64.9 NC_003085.1 + 43746 0.67 0.229267
Target:  5'- gAGCCGGgucCGC-CCCGGuggugGGCGCGG-GCUu -3'
miRNA:   3'- -UCGGCU---GUGcGGGCC-----UCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 17957 0.67 0.23498
Target:  5'- uGCUggGGCACcugaaGCgCCGGcAGCGCGG-GCCg -3'
miRNA:   3'- uCGG--CUGUG-----CG-GGCC-UCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 22800 0.67 0.23498
Target:  5'- cGGCCG-CuccCGCCCaGGAgGCGaCGGCcCCg -3'
miRNA:   3'- -UCGGCuGu--GCGGG-CCU-CGC-GCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 39950 0.67 0.23498
Target:  5'- gAGCCGAUGa-CCCGccGCGCGcCGCCa -3'
miRNA:   3'- -UCGGCUGUgcGGGCcuCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 44252 0.67 0.23498
Target:  5'- gGGCCGcguCGCGCUCGGA-CuCGGCcuGCCu -3'
miRNA:   3'- -UCGGCu--GUGCGGGCCUcGcGCCG--CGG- -5'
11432 3' -64.9 NC_003085.1 + 40032 0.67 0.227577
Target:  5'- cGCCGGCACGUCCGcguCGUGGUagggaaagaugcucGCCu -3'
miRNA:   3'- uCGGCUGUGCGGGCcucGCGCCG--------------CGG- -5'
11432 3' -64.9 NC_003085.1 + 28520 0.67 0.223672
Target:  5'- cGGUgGACGCGUCaGGGcgaaucCGCGGCGUCg -3'
miRNA:   3'- -UCGgCUGUGCGGgCCUc-----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13914 0.67 0.218194
Target:  5'- cGGCguGCGCGCguuucggaCGGGGCGCG-CGCCg -3'
miRNA:   3'- -UCGgcUGUGCGg-------GCCUCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 15065 0.67 0.218194
Target:  5'- aAGCCucguggGAgUugGCCCuggaGGAGgGaCGGCGCCu -3'
miRNA:   3'- -UCGG------CU-GugCGGG----CCUCgC-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 497 0.67 0.223672
Target:  5'- aGGCUGAgggccUGCGUuuGGAGC-CGGUGUCu -3'
miRNA:   3'- -UCGGCU-----GUGCGggCCUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13970 0.68 0.1896
Target:  5'- uGGcCCGAaGCGCCCGuugcucgguuggaccGAGCGCGaacuCGCCa -3'
miRNA:   3'- -UC-GGCUgUGCGGGC---------------CUCGCGCc---GCGG- -5'
11432 3' -64.9 NC_003085.1 + 45755 0.68 0.202443
Target:  5'- cGUCGuCACcaccaGCaCCGGA-CGCGGCGUCa -3'
miRNA:   3'- uCGGCuGUG-----CG-GGCCUcGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 40363 0.68 0.202443
Target:  5'- aAGCCGcUGCuGCCCGcGGCGCugacgccucuGGCGCUg -3'
miRNA:   3'- -UCGGCuGUG-CGGGCcUCGCG----------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 48130 0.68 0.202443
Target:  5'- cGCCaGCA-GUCUGGgcugccuccuccAGCGCGGCGUCg -3'
miRNA:   3'- uCGGcUGUgCGGGCC------------UCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 6744 0.68 0.202443
Target:  5'- uGGuCCGAC-UGCCCGGccUGCcGCGCCg -3'
miRNA:   3'- -UC-GGCUGuGCGGGCCucGCGcCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.