miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 13970 0.68 0.1896
Target:  5'- uGGcCCGAaGCGCCCGuugcucgguuggaccGAGCGCGaacuCGCCa -3'
miRNA:   3'- -UC-GGCUgUGCGGGC---------------CUCGCGCc---GCGG- -5'
11432 3' -64.9 NC_003085.1 + 48225 0.68 0.181595
Target:  5'- uGCCucCGCaGCCCcuccaacuccuccaGcAGCGCGGCGCCg -3'
miRNA:   3'- uCGGcuGUG-CGGG--------------CcUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 42359 0.68 0.178387
Target:  5'- cGCCGcccgcucgcGCAUGCCCucggcggcauGAGCGCGG-GCCu -3'
miRNA:   3'- uCGGC---------UGUGCGGGc---------CUCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 7460 0.68 0.192499
Target:  5'- uGCCGACGcCGCCgGGgcaggaacacGGCGaGGCGUg -3'
miRNA:   3'- uCGGCUGU-GCGGgCC----------UCGCgCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 20332 0.68 0.192499
Target:  5'- aGGCgGACucaauCGCCUGGuuccGCGCcGCGUCg -3'
miRNA:   3'- -UCGgCUGu----GCGGGCCu---CGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 22049 0.68 0.1896
Target:  5'- -aCCGGCgauuGCGCCCGcGGgcagguaccacgcgcGCGCGGUGUCg -3'
miRNA:   3'- ucGGCUG----UGCGGGC-CU---------------CGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 44991 0.68 0.187689
Target:  5'- gGGCgGGCACGgcgaacCCCGGAGaacaGUG-CGCCg -3'
miRNA:   3'- -UCGgCUGUGC------GGGCCUCg---CGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 38691 0.68 0.187689
Target:  5'- gAGgUGGCAUGCCCccAGCGUcuucccGGCGCCc -3'
miRNA:   3'- -UCgGCUGUGCGGGccUCGCG------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 31520 0.68 0.182986
Target:  5'- uGGCCccaGCAgaGCCCaGAGCGCcGCGCUg -3'
miRNA:   3'- -UCGGc--UGUg-CGGGcCUCGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 39294 0.68 0.201936
Target:  5'- cAGCCGGgucCGCCCGGuccuCGCGGUacuccccGCCg -3'
miRNA:   3'- -UCGGCUgu-GCGGGCCuc--GCGCCG-------CGG- -5'
11432 3' -64.9 NC_003085.1 + 45610 0.68 0.177932
Target:  5'- cGUCGACGCGCCgUGGuccuggaugggcAGUGCGGgaaugcuCGCCg -3'
miRNA:   3'- uCGGCUGUGCGG-GCC------------UCGCGCC-------GCGG- -5'
11432 3' -64.9 NC_003085.1 + 1686 0.68 0.202443
Target:  5'- uGGCCGAagcacaaguCGCCUGcGAGCGCcuGGcCGUCg -3'
miRNA:   3'- -UCGGCUgu-------GCGGGC-CUCGCG--CC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 38994 0.68 0.192499
Target:  5'- aGGUCGGC-CaGCCgaGGGGCGCcaaaGCGCCg -3'
miRNA:   3'- -UCGGCUGuG-CGGg-CCUCGCGc---CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 16286 0.69 0.17389
Target:  5'- -aCUGGCGCGacuaCUGGAGCa-GGCGCCa -3'
miRNA:   3'- ucGGCUGUGCg---GGCCUCGcgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 11587 0.69 0.156902
Target:  5'- cGCCuGGCugGaaCGGGGCaggGCGGCGCg -3'
miRNA:   3'- uCGG-CUGugCggGCCUCG---CGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 25273 0.69 0.156094
Target:  5'- cGUCGGCGCGCCCGucuaccucaccGCGaCGGCcgGCCa -3'
miRNA:   3'- uCGGCUGUGCGGGCcu---------CGC-GCCG--CGG- -5'
11432 3' -64.9 NC_003085.1 + 39595 0.69 0.152896
Target:  5'- aAGCUGgaGCGCGUCgCGGAGCGCaccgagcaGGUgGCCg -3'
miRNA:   3'- -UCGGC--UGUGCGG-GCCUCGCG--------CCG-CGG- -5'
11432 3' -64.9 NC_003085.1 + 17927 0.69 0.148983
Target:  5'- uGCCu--GCGCCC--AGCGCGGCGCUc -3'
miRNA:   3'- uCGGcugUGCGGGccUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 4401 0.69 0.148983
Target:  5'- -uCCGGCACGCUgGGcGCGCaucuacuccGGUGCCc -3'
miRNA:   3'- ucGGCUGUGCGGgCCuCGCG---------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13791 0.69 0.156902
Target:  5'- aGGCgagCGugACGCCagucugcgUGGAG-GUGGCGCCa -3'
miRNA:   3'- -UCG---GCugUGCGG--------GCCUCgCGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.