Results 121 - 140 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11432 | 3' | -64.9 | NC_003085.1 | + | 1559 | 0.69 | 0.161003 |
Target: 5'- aGGCCGugcGCGuCGCCUGcaguugcGGCGCGGCGUa -3' miRNA: 3'- -UCGGC---UGU-GCGGGCc------UCGCGCCGCGg -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 16286 | 0.69 | 0.17389 |
Target: 5'- -aCUGGCGCGacuaCUGGAGCa-GGCGCCa -3' miRNA: 3'- ucGGCUGUGCg---GGCCUCGcgCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 40684 | 0.69 | 0.1652 |
Target: 5'- cGCCGGCgcagggggacgACGUCCGG-GUGCuggacGCGCCg -3' miRNA: 3'- uCGGCUG-----------UGCGGGCCuCGCGc----CGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 43896 | 0.69 | 0.156902 |
Target: 5'- uAGaCGugGCGCaCCGu--CGCGGCGCCa -3' miRNA: 3'- -UCgGCugUGCG-GGCcucGCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 26536 | 0.69 | 0.148983 |
Target: 5'- cGUCGACGCgGCCuCGGAGgGCuuCGCCc -3' miRNA: 3'- uCGGCUGUG-CGG-GCCUCgCGccGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 14804 | 0.69 | 0.161003 |
Target: 5'- aGGCCGACAUccuccgcgagGCCaucgCGGAGUG-GuGCGCCa -3' miRNA: 3'- -UCGGCUGUG----------CGG----GCCUCGCgC-CGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 28695 | 0.69 | 0.161003 |
Target: 5'- cGCgGACaACGCgCGGAGCuGC-GCGCUg -3' miRNA: 3'- uCGgCUG-UGCGgGCCUCG-CGcCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 21461 | 0.69 | 0.156902 |
Target: 5'- uGGCUGACGuuCGCCgacaagggCGGccuGCGCGGCGUg -3' miRNA: 3'- -UCGGCUGU--GCGG--------GCCu--CGCGCCGCGg -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 13791 | 0.69 | 0.156902 |
Target: 5'- aGGCgagCGugACGCCagucugcgUGGAG-GUGGCGCCa -3' miRNA: 3'- -UCG---GCugUGCGG--------GCCUCgCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 11587 | 0.69 | 0.156902 |
Target: 5'- cGCCuGGCugGaaCGGGGCaggGCGGCGCg -3' miRNA: 3'- uCGG-CUGugCggGCCUCG---CGCCGCGg -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 25273 | 0.69 | 0.156094 |
Target: 5'- cGUCGGCGCGCCCGucuaccucaccGCGaCGGCcgGCCa -3' miRNA: 3'- uCGGCUGUGCGGGCcu---------CGC-GCCG--CGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 39595 | 0.69 | 0.152896 |
Target: 5'- aAGCUGgaGCGCGUCgCGGAGCGCaccgagcaGGUgGCCg -3' miRNA: 3'- -UCGGC--UGUGCGG-GCCUCGCG--------CCG-CGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 17927 | 0.69 | 0.148983 |
Target: 5'- uGCCu--GCGCCC--AGCGCGGCGCUc -3' miRNA: 3'- uCGGcugUGCGGGccUCGCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 4401 | 0.69 | 0.148983 |
Target: 5'- -uCCGGCACGCUgGGcGCGCaucuacuccGGUGCCc -3' miRNA: 3'- ucGGCUGUGCGGgCCuCGCG---------CCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 24841 | 0.69 | 0.16267 |
Target: 5'- cGCCGAgGCgcagauucucGCCUGGGccggcaaccucaccuGCaGCGGCGCCc -3' miRNA: 3'- uCGGCUgUG----------CGGGCCU---------------CG-CGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 47592 | 0.7 | 0.134227 |
Target: 5'- gGGCCGAUgaGCGCaagaCGGAGC-CG-CGCCu -3' miRNA: 3'- -UCGGCUG--UGCGg---GCCUCGcGCcGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 24984 | 0.7 | 0.130412 |
Target: 5'- uGCCgcagaacaucucgGACACGUCCGcGGUGCagaaGGCGCCg -3' miRNA: 3'- uCGG-------------CUGUGCGGGCcUCGCG----CCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 30233 | 0.7 | 0.127365 |
Target: 5'- uGGCCcuGGCGCagGCCUu--GCGCGGCGCCc -3' miRNA: 3'- -UCGG--CUGUG--CGGGccuCGCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 22105 | 0.7 | 0.127365 |
Target: 5'- aAGCaGGC-CGCCCagcaGAGCcCGGCGCCg -3' miRNA: 3'- -UCGgCUGuGCGGGc---CUCGcGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 48850 | 0.7 | 0.145161 |
Target: 5'- cAGCCucgaGCGCGCCCaGGA---CGGCGCCa -3' miRNA: 3'- -UCGGc---UGUGCGGG-CCUcgcGCCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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