miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 26926 0.67 0.240812
Target:  5'- aGGCCG-UugGCCUGcauguacCGCGGCGCUu -3'
miRNA:   3'- -UCGGCuGugCGGGCcuc----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13562 0.67 0.23498
Target:  5'- uGGCCGugGCaugGCCCuGGGacucCGCGGC-CCg -3'
miRNA:   3'- -UCGGCugUG---CGGGcCUC----GCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 497 0.67 0.223672
Target:  5'- aGGCUGAgggccUGCGUuuGGAGC-CGGUGUCu -3'
miRNA:   3'- -UCGGCU-----GUGCGggCCUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28520 0.67 0.223672
Target:  5'- cGGUgGACGCGUCaGGGcgaaucCGCGGCGUCg -3'
miRNA:   3'- -UCGgCUGUGCGGgCCUc-----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 14882 0.67 0.21283
Target:  5'- uGCCgGACACcuucaaCCUGGcuGUGCGGCGCa -3'
miRNA:   3'- uCGG-CUGUGc-----GGGCCu-CGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 10056 0.67 0.2123
Target:  5'- aGGCUgGAUACgaGCCUGGAgGCGaagagguUGGCGCCg -3'
miRNA:   3'- -UCGG-CUGUG--CGGGCCU-CGC-------GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 37035 0.67 0.207581
Target:  5'- --aCGACACaGCCuccuCGGAGCGCaGCgGCCc -3'
miRNA:   3'- ucgGCUGUG-CGG----GCCUCGCGcCG-CGG- -5'
11432 3' -64.9 NC_003085.1 + 24657 0.67 0.207581
Target:  5'- aAGCCG-CGCGCCgCGacGGGCugaGCGGCaCCa -3'
miRNA:   3'- -UCGGCuGUGCGG-GC--CUCG---CGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 22628 0.67 0.207581
Target:  5'- uGGCgGgggcACACGCCUGGcGCGCaGGgGCa -3'
miRNA:   3'- -UCGgC----UGUGCGGGCCuCGCG-CCgCGg -5'
11432 3' -64.9 NC_003085.1 + 30377 0.67 0.218194
Target:  5'- gGGUgCGGCGCacuccGUCCGG-GCcCGGCGCCu -3'
miRNA:   3'- -UCG-GCUGUG-----CGGGCCuCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 34237 0.67 0.218194
Target:  5'- gAGuuGGCGCaaguccaccucGCCCacuuccgcGGCGCGGCGCUg -3'
miRNA:   3'- -UCggCUGUG-----------CGGGcc------UCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 36352 0.67 0.218194
Target:  5'- gAGCCcgcgcuCACGCaCCucAGCGCGGCGUg -3'
miRNA:   3'- -UCGGcu----GUGCG-GGccUCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 828 0.67 0.218194
Target:  5'- cGGCCuGugGCGCaaGGugaaGGCauaCGGCGCCa -3'
miRNA:   3'- -UCGG-CugUGCGggCC----UCGc--GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13452 0.67 0.218194
Target:  5'- uGGCCGcCAucCGCCaagcugucgCGGAGCGUuuccugGGCGUCg -3'
miRNA:   3'- -UCGGCuGU--GCGG---------GCCUCGCG------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 7554 0.67 0.223672
Target:  5'- gGGCU-ACACGCCCgagaaugcgcuGGAGuCGCuGCGUCa -3'
miRNA:   3'- -UCGGcUGUGCGGG-----------CCUC-GCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 3421 0.67 0.229267
Target:  5'- cAGCCGuauCGCGCCUgcuGGAGaacuucgaGCaGGCGaCCa -3'
miRNA:   3'- -UCGGCu--GUGCGGG---CCUCg-------CG-CCGC-GG- -5'
11432 3' -64.9 NC_003085.1 + 17957 0.67 0.23498
Target:  5'- uGCUggGGCACcugaaGCgCCGGcAGCGCGG-GCCg -3'
miRNA:   3'- uCGG--CUGUG-----CG-GGCC-UCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 43746 0.67 0.229267
Target:  5'- gAGCCGGgucCGC-CCCGGuggugGGCGCGG-GCUu -3'
miRNA:   3'- -UCGGCU---GUGcGGGCC-----UCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 10617 0.67 0.229267
Target:  5'- uGGCCaauGCACcUCCGGcuguGUGgGGCGCCg -3'
miRNA:   3'- -UCGGc--UGUGcGGGCCu---CGCgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 32219 0.67 0.229267
Target:  5'- cGCa-ACAcCGCCCaGAGCacGgGGCGCCg -3'
miRNA:   3'- uCGgcUGU-GCGGGcCUCG--CgCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.