miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 11587 0.69 0.156902
Target:  5'- cGCCuGGCugGaaCGGGGCaggGCGGCGCg -3'
miRNA:   3'- uCGG-CUGugCggGCCUCG---CGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 28695 0.69 0.161003
Target:  5'- cGCgGACaACGCgCGGAGCuGC-GCGCUg -3'
miRNA:   3'- uCGgCUG-UGCGgGCCUCG-CGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 1559 0.69 0.161003
Target:  5'- aGGCCGugcGCGuCGCCUGcaguugcGGCGCGGCGUa -3'
miRNA:   3'- -UCGGC---UGU-GCGGGCc------UCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 14804 0.69 0.161003
Target:  5'- aGGCCGACAUccuccgcgagGCCaucgCGGAGUG-GuGCGCCa -3'
miRNA:   3'- -UCGGCUGUG----------CGG----GCCUCGCgC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 24841 0.69 0.16267
Target:  5'- cGCCGAgGCgcagauucucGCCUGGGccggcaaccucaccuGCaGCGGCGCCc -3'
miRNA:   3'- uCGGCUgUG----------CGGGCCU---------------CG-CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 40684 0.69 0.1652
Target:  5'- cGCCGGCgcagggggacgACGUCCGG-GUGCuggacGCGCCg -3'
miRNA:   3'- uCGGCUG-----------UGCGGGCCuCGCGc----CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 19396 0.69 0.169496
Target:  5'- gGGCCGGUACcccagcaagGCCC--AGgGCGGCGCCa -3'
miRNA:   3'- -UCGGCUGUG---------CGGGccUCgCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 25778 0.69 0.169496
Target:  5'- uGCUGcGCGgGCCCGcuGCGUGGaCGCCu -3'
miRNA:   3'- uCGGC-UGUgCGGGCcuCGCGCC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 25235 0.69 0.169496
Target:  5'- -aCCGGCGcCGCCCuGGuGCGCuccgcggcgGGCGUCg -3'
miRNA:   3'- ucGGCUGU-GCGGG-CCuCGCG---------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 19060 0.69 0.169496
Target:  5'- --gCGGCGCGCggCGGAGCa-GGCGCCg -3'
miRNA:   3'- ucgGCUGUGCGg-GCCUCGcgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 8975 0.69 0.173003
Target:  5'- cGGCuCGAgACGCCCgccagcagcgacaGGAGUcccaccaGUGGCGCUa -3'
miRNA:   3'- -UCG-GCUgUGCGGG-------------CCUCG-------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 7616 0.69 0.17389
Target:  5'- aGGUgGACcaGCGCCgggcgggacucaUGGGGCgcuuggGCGGCGCCg -3'
miRNA:   3'- -UCGgCUG--UGCGG------------GCCUCG------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 16286 0.69 0.17389
Target:  5'- -aCUGGCGCGacuaCUGGAGCa-GGCGCCa -3'
miRNA:   3'- ucGGCUGUGCg---GGCCUCGcgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 45610 0.68 0.177932
Target:  5'- cGUCGACGCGCCgUGGuccuggaugggcAGUGCGGgaaugcuCGCCg -3'
miRNA:   3'- uCGGCUGUGCGG-GCC------------UCGCGCC-------GCGG- -5'
11432 3' -64.9 NC_003085.1 + 42359 0.68 0.178387
Target:  5'- cGCCGcccgcucgcGCAUGCCCucggcggcauGAGCGCGG-GCCu -3'
miRNA:   3'- uCGGC---------UGUGCGGGc---------CUCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 48225 0.68 0.181595
Target:  5'- uGCCucCGCaGCCCcuccaacuccuccaGcAGCGCGGCGCCg -3'
miRNA:   3'- uCGGcuGUG-CGGG--------------CcUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 31520 0.68 0.182986
Target:  5'- uGGCCccaGCAgaGCCCaGAGCGCcGCGCUg -3'
miRNA:   3'- -UCGGc--UGUg-CGGGcCUCGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 38691 0.68 0.187689
Target:  5'- gAGgUGGCAUGCCCccAGCGUcuucccGGCGCCc -3'
miRNA:   3'- -UCgGCUGUGCGGGccUCGCG------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 44991 0.68 0.187689
Target:  5'- gGGCgGGCACGgcgaacCCCGGAGaacaGUG-CGCCg -3'
miRNA:   3'- -UCGgCUGUGC------GGGCCUCg---CGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 22049 0.68 0.1896
Target:  5'- -aCCGGCgauuGCGCCCGcGGgcagguaccacgcgcGCGCGGUGUCg -3'
miRNA:   3'- ucGGCUG----UGCGGGC-CU---------------CGCGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.