Results 101 - 120 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11432 | 3' | -64.9 | NC_003085.1 | + | 40363 | 0.68 | 0.202443 |
Target: 5'- aAGCCGcUGCuGCCCGcGGCGCugacgccucuGGCGCUg -3' miRNA: 3'- -UCGGCuGUG-CGGGCcUCGCG----------CCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 39294 | 0.68 | 0.201936 |
Target: 5'- cAGCCGGgucCGCCCGGuccuCGCGGUacuccccGCCg -3' miRNA: 3'- -UCGGCUgu-GCGGGCCuc--GCGCCG-------CGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 38994 | 0.68 | 0.192499 |
Target: 5'- aGGUCGGC-CaGCCgaGGGGCGCcaaaGCGCCg -3' miRNA: 3'- -UCGGCUGuG-CGGg-CCUCGCGc---CGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 7460 | 0.68 | 0.192499 |
Target: 5'- uGCCGACGcCGCCgGGgcaggaacacGGCGaGGCGUg -3' miRNA: 3'- uCGGCUGU-GCGGgCC----------UCGCgCCGCGg -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 20332 | 0.68 | 0.192499 |
Target: 5'- aGGCgGACucaauCGCCUGGuuccGCGCcGCGUCg -3' miRNA: 3'- -UCGgCUGu----GCGGGCCu---CGCGcCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 13970 | 0.68 | 0.1896 |
Target: 5'- uGGcCCGAaGCGCCCGuugcucgguuggaccGAGCGCGaacuCGCCa -3' miRNA: 3'- -UC-GGCUgUGCGGGC---------------CUCGCGCc---GCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 22049 | 0.68 | 0.1896 |
Target: 5'- -aCCGGCgauuGCGCCCGcGGgcagguaccacgcgcGCGCGGUGUCg -3' miRNA: 3'- ucGGCUG----UGCGGGC-CU---------------CGCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 44991 | 0.68 | 0.187689 |
Target: 5'- gGGCgGGCACGgcgaacCCCGGAGaacaGUG-CGCCg -3' miRNA: 3'- -UCGgCUGUGC------GGGCCUCg---CGCcGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 38691 | 0.68 | 0.187689 |
Target: 5'- gAGgUGGCAUGCCCccAGCGUcuucccGGCGCCc -3' miRNA: 3'- -UCgGCUGUGCGGGccUCGCG------CCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 31520 | 0.68 | 0.182986 |
Target: 5'- uGGCCccaGCAgaGCCCaGAGCGCcGCGCUg -3' miRNA: 3'- -UCGGc--UGUg-CGGGcCUCGCGcCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 48225 | 0.68 | 0.181595 |
Target: 5'- uGCCucCGCaGCCCcuccaacuccuccaGcAGCGCGGCGCCg -3' miRNA: 3'- uCGGcuGUG-CGGG--------------CcUCGCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 42359 | 0.68 | 0.178387 |
Target: 5'- cGCCGcccgcucgcGCAUGCCCucggcggcauGAGCGCGG-GCCu -3' miRNA: 3'- uCGGC---------UGUGCGGGc---------CUCGCGCCgCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 45610 | 0.68 | 0.177932 |
Target: 5'- cGUCGACGCGCCgUGGuccuggaugggcAGUGCGGgaaugcuCGCCg -3' miRNA: 3'- uCGGCUGUGCGG-GCC------------UCGCGCC-------GCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 7616 | 0.69 | 0.17389 |
Target: 5'- aGGUgGACcaGCGCCgggcgggacucaUGGGGCgcuuggGCGGCGCCg -3' miRNA: 3'- -UCGgCUG--UGCGG------------GCCUCG------CGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 16286 | 0.69 | 0.17389 |
Target: 5'- -aCUGGCGCGacuaCUGGAGCa-GGCGCCa -3' miRNA: 3'- ucGGCUGUGCg---GGCCUCGcgCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 8975 | 0.69 | 0.173003 |
Target: 5'- cGGCuCGAgACGCCCgccagcagcgacaGGAGUcccaccaGUGGCGCUa -3' miRNA: 3'- -UCG-GCUgUGCGGG-------------CCUCG-------CGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 25235 | 0.69 | 0.169496 |
Target: 5'- -aCCGGCGcCGCCCuGGuGCGCuccgcggcgGGCGUCg -3' miRNA: 3'- ucGGCUGU-GCGGG-CCuCGCG---------CCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 19396 | 0.69 | 0.169496 |
Target: 5'- gGGCCGGUACcccagcaagGCCC--AGgGCGGCGCCa -3' miRNA: 3'- -UCGGCUGUG---------CGGGccUCgCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 19060 | 0.69 | 0.169496 |
Target: 5'- --gCGGCGCGCggCGGAGCa-GGCGCCg -3' miRNA: 3'- ucgGCUGUGCGg-GCCUCGcgCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 25778 | 0.69 | 0.169496 |
Target: 5'- uGCUGcGCGgGCCCGcuGCGUGGaCGCCu -3' miRNA: 3'- uCGGC-UGUgCGGGCcuCGCGCC-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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