miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 10654 0.66 0.271796
Target:  5'- uGCUcACACGCCUGGcugAGCGaCaGCGCa -3'
miRNA:   3'- uCGGcUGUGCGGGCC---UCGC-GcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 11036 0.66 0.265352
Target:  5'- cGCCGAgaCAgGCCCGGAcuuGUGaCGG-GCUa -3'
miRNA:   3'- uCGGCU--GUgCGGGCCU---CGC-GCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 11103 0.67 0.234404
Target:  5'- cGCCGGCGgcauucgUGCCCaGGAaguuGCGC-GUGCCa -3'
miRNA:   3'- uCGGCUGU-------GCGGG-CCU----CGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 11533 0.73 0.083147
Target:  5'- cGGCCG-CGCGUUCGucGAGCGCcGGgGCCa -3'
miRNA:   3'- -UCGGCuGUGCGGGC--CUCGCG-CCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 11587 0.69 0.156902
Target:  5'- cGCCuGGCugGaaCGGGGCaggGCGGCGCg -3'
miRNA:   3'- uCGG-CUGugCggGCCUCG---CGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 11631 0.71 0.120828
Target:  5'- gGGCUGcuaccaGCGCGCgCGGAGgGCauuGCGCCg -3'
miRNA:   3'- -UCGGC------UGUGCGgGCCUCgCGc--CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 11753 0.67 0.207581
Target:  5'- gGGCaUGACACGCgucuacgaCGGuacgGCGGCGCCg -3'
miRNA:   3'- -UCG-GCUGUGCGg-------GCCucg-CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 12216 0.7 0.145161
Target:  5'- uGGUcugCGACGCcuGCCUuGAGCGCGGCGgCu -3'
miRNA:   3'- -UCG---GCUGUG--CGGGcCUCGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 12332 0.74 0.066948
Target:  5'- cGCCGuCGCcguGCCCGGcGUGaCGGUGCCa -3'
miRNA:   3'- uCGGCuGUG---CGGGCCuCGC-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 12464 0.74 0.072435
Target:  5'- cGCUGGgGCGCCagcagugcccugcUGGAGUcgaaGCGGCGCCa -3'
miRNA:   3'- uCGGCUgUGCGG-------------GCCUCG----CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 12598 0.66 0.265352
Target:  5'- uGGuCCGACugACGCgCGuGGCGCcccgGGCGCUg -3'
miRNA:   3'- -UC-GGCUG--UGCGgGCcUCGCG----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13098 0.66 0.259033
Target:  5'- -aCUGGCACGCCgCGcugaggugcguGAGCGCGG-GCUc -3'
miRNA:   3'- ucGGCUGUGCGG-GC-----------CUCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 13452 0.67 0.218194
Target:  5'- uGGCCGcCAucCGCCaagcugucgCGGAGCGUuuccugGGCGUCg -3'
miRNA:   3'- -UCGGCuGU--GCGG---------GCCUCGCG------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13562 0.67 0.23498
Target:  5'- uGGCCGugGCaugGCCCuGGGacucCGCGGC-CCg -3'
miRNA:   3'- -UCGGCugUG---CGGGcCUC----GCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 13791 0.69 0.156902
Target:  5'- aGGCgagCGugACGCCagucugcgUGGAG-GUGGCGCCa -3'
miRNA:   3'- -UCG---GCugUGCGG--------GCCUCgCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13914 0.67 0.218194
Target:  5'- cGGCguGCGCGCguuucggaCGGGGCGCG-CGCCg -3'
miRNA:   3'- -UCGgcUGUGCGg-------GCCUCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13970 0.68 0.1896
Target:  5'- uGGcCCGAaGCGCCCGuugcucgguuggaccGAGCGCGaacuCGCCa -3'
miRNA:   3'- -UC-GGCUgUGCGGGC---------------CUCGCGCc---GCGG- -5'
11432 3' -64.9 NC_003085.1 + 14632 0.66 0.252837
Target:  5'- cGCCuucuuGACGCGCUCGGucAGCGCcgaaGGCucccGCCc -3'
miRNA:   3'- uCGG-----CUGUGCGGGCC--UCGCG----CCG----CGG- -5'
11432 3' -64.9 NC_003085.1 + 14804 0.69 0.161003
Target:  5'- aGGCCGACAUccuccgcgagGCCaucgCGGAGUG-GuGCGCCa -3'
miRNA:   3'- -UCGGCUGUG----------CGG----GCCUCGCgC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 14882 0.67 0.21283
Target:  5'- uGCCgGACACcuucaaCCUGGcuGUGCGGCGCa -3'
miRNA:   3'- uCGG-CUGUGc-----GGGCCu-CGCGCCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.