miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 20598 0.71 0.120828
Target:  5'- uGCuCGGCAgCGCCgCGGAagucGgGCGGCGCg -3'
miRNA:   3'- uCG-GCUGU-GCGG-GCCU----CgCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 20821 0.67 0.21283
Target:  5'- gGGUgGACGCcauCCUGGAugagGCGacCGGCGCCg -3'
miRNA:   3'- -UCGgCUGUGc--GGGCCU----CGC--GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 21461 0.69 0.156902
Target:  5'- uGGCUGACGuuCGCCgacaagggCGGccuGCGCGGCGUg -3'
miRNA:   3'- -UCGGCUGU--GCGG--------GCCu--CGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 21498 0.66 0.271796
Target:  5'- uGGUgGACugGuuCCCcuuGGAGCccgucgucGCGGCGCUg -3'
miRNA:   3'- -UCGgCUGugC--GGG---CCUCG--------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 22049 0.68 0.1896
Target:  5'- -aCCGGCgauuGCGCCCGcGGgcagguaccacgcgcGCGCGGUGUCg -3'
miRNA:   3'- ucGGCUG----UGCGGGC-CU---------------CGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 22105 0.7 0.127365
Target:  5'- aAGCaGGC-CGCCCagcaGAGCcCGGCGCCg -3'
miRNA:   3'- -UCGgCUGuGCGGGc---CUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 22628 0.67 0.207581
Target:  5'- uGGCgGgggcACACGCCUGGcGCGCaGGgGCa -3'
miRNA:   3'- -UCGgC----UGUGCGGGCCuCGCG-CCgCGg -5'
11432 3' -64.9 NC_003085.1 + 22761 0.72 0.097686
Target:  5'- cGCCGACgACGCCCGc--CGCGGUGgCg -3'
miRNA:   3'- uCGGCUG-UGCGGGCcucGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 22800 0.67 0.23498
Target:  5'- cGGCCG-CuccCGCCCaGGAgGCGaCGGCcCCg -3'
miRNA:   3'- -UCGGCuGu--GCGGG-CCU-CGC-GCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 22861 0.66 0.257162
Target:  5'- gAGuCCGGCAgCGCCCacaggugguaccgaGGAGCcUGGUGCg -3'
miRNA:   3'- -UC-GGCUGU-GCGGG--------------CCUCGcGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 24102 0.71 0.111605
Target:  5'- cGUCGGCGugcccgucacCGUCCGGaAGCGCG-CGCCa -3'
miRNA:   3'- uCGGCUGU----------GCGGGCC-UCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 24199 0.67 0.240812
Target:  5'- cGCCGAgUACGCgCUGaAGCaguacGCGGUGCCc -3'
miRNA:   3'- uCGGCU-GUGCG-GGCcUCG-----CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 24206 0.81 0.020426
Target:  5'- cGCCGACGacgacgccCGCCgCGGAGCgcaccaggGCGGCGCCg -3'
miRNA:   3'- uCGGCUGU--------GCGG-GCCUCG--------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 24657 0.67 0.207581
Target:  5'- aAGCCG-CGCGCCgCGacGGGCugaGCGGCaCCa -3'
miRNA:   3'- -UCGGCuGUGCGG-GC--CUCG---CGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 24841 0.69 0.16267
Target:  5'- cGCCGAgGCgcagauucucGCCUGGGccggcaaccucaccuGCaGCGGCGCCc -3'
miRNA:   3'- uCGGCUgUG----------CGGGCCU---------------CG-CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 24984 0.7 0.130412
Target:  5'- uGCCgcagaacaucucgGACACGUCCGcGGUGCagaaGGCGCCg -3'
miRNA:   3'- uCGG-------------CUGUGCGGGCcUCGCG----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 25161 0.67 0.207062
Target:  5'- uGGCCGGCGaccgugGCCUGGuggcgguGGCGaUGaGCGCCa -3'
miRNA:   3'- -UCGGCUGUg-----CGGGCC-------UCGC-GC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 25235 0.69 0.169496
Target:  5'- -aCCGGCGcCGCCCuGGuGCGCuccgcggcgGGCGUCg -3'
miRNA:   3'- ucGGCUGU-GCGGG-CCuCGCG---------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 25273 0.69 0.156094
Target:  5'- cGUCGGCGCGCCCGucuaccucaccGCGaCGGCcgGCCa -3'
miRNA:   3'- uCGGCUGUGCGGGCcu---------CGC-GCCG--CGG- -5'
11432 3' -64.9 NC_003085.1 + 25778 0.69 0.169496
Target:  5'- uGCUGcGCGgGCCCGcuGCGUGGaCGCCu -3'
miRNA:   3'- uCGGC-UGUgCGGGCcuCGCGCC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.