miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 26124 0.74 0.06515
Target:  5'- cGGCCGGCgGCGCuuGGccGGCcagaGCGGCGUCa -3'
miRNA:   3'- -UCGGCUG-UGCGggCC--UCG----CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 26220 0.69 0.156902
Target:  5'- cGGgCGGCGCgGUgCGaAGCGCGGCgGCCg -3'
miRNA:   3'- -UCgGCUGUG-CGgGCcUCGCGCCG-CGG- -5'
11432 3' -64.9 NC_003085.1 + 26536 0.69 0.148983
Target:  5'- cGUCGACGCgGCCuCGGAGgGCuuCGCCc -3'
miRNA:   3'- uCGGCUGUG-CGG-GCCUCgCGccGCGG- -5'
11432 3' -64.9 NC_003085.1 + 26575 0.72 0.090139
Target:  5'- cGCCGACGCa-CCGGAGUcCGGCGgCg -3'
miRNA:   3'- uCGGCUGUGcgGGCCUCGcGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 26711 0.72 0.097686
Target:  5'- gAGC--GCGCGCagggCGGugacGGCGCGGCGCCg -3'
miRNA:   3'- -UCGgcUGUGCGg---GCC----UCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 26926 0.67 0.240812
Target:  5'- aGGCCG-UugGCCUGcauguacCGCGGCGCUu -3'
miRNA:   3'- -UCGGCuGugCGGGCcuc----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 27071 0.74 0.06515
Target:  5'- -cUCGACGCGCCCcgucucgggguuGGGGCgguacacguaGCGGCGCCu -3'
miRNA:   3'- ucGGCUGUGCGGG------------CCUCG----------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 27324 0.67 0.229267
Target:  5'- gGGCCacCACcuuuggGUCCGGcuGCuGCGGCGCCg -3'
miRNA:   3'- -UCGGcuGUG------CGGGCCu-CG-CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28142 0.71 0.120828
Target:  5'- cGGCCGACGCuGCUCucugaGAGUGCGaCGCCc -3'
miRNA:   3'- -UCGGCUGUG-CGGGc----CUCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28181 0.66 0.259033
Target:  5'- gGGCCagGACgaaGUCUGG-GCGCGGCaCCa -3'
miRNA:   3'- -UCGG--CUGug-CGGGCCuCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 28185 0.66 0.274408
Target:  5'- uGCaGGCGCGCUaucgcuacgacuucgCGGAGU-UGGCGCCa -3'
miRNA:   3'- uCGgCUGUGCGG---------------GCCUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28520 0.67 0.223672
Target:  5'- cGGUgGACGCGUCaGGGcgaaucCGCGGCGUCg -3'
miRNA:   3'- -UCGgCUGUGCGGgCCUc-----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28598 0.75 0.055305
Target:  5'- cGGUgGACACGCCgGuGGUGUGGCGCUc -3'
miRNA:   3'- -UCGgCUGUGCGGgCcUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28607 0.67 0.223672
Target:  5'- uGGgCGGCAcCGCagCGGcgAGCuCGGCGCCg -3'
miRNA:   3'- -UCgGCUGU-GCGg-GCC--UCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28695 0.69 0.161003
Target:  5'- cGCgGACaACGCgCGGAGCuGC-GCGCUg -3'
miRNA:   3'- uCGgCUG-UGCGgGCCUCG-CGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 29182 0.66 0.246764
Target:  5'- cGCaguGGCAgCGCCgcgaggacgCGGAGCGCacGCGCCu -3'
miRNA:   3'- uCGg--CUGU-GCGG---------GCCUCGCGc-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 29375 0.66 0.259033
Target:  5'- cGcCCGGCagaACGCCauggCGGAGuUGCuGCGCCa -3'
miRNA:   3'- uC-GGCUG---UGCGG----GCCUC-GCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 30233 0.7 0.127365
Target:  5'- uGGCCcuGGCGCagGCCUu--GCGCGGCGCCc -3'
miRNA:   3'- -UCGG--CUGUG--CGGGccuCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 30338 0.72 0.103045
Target:  5'- uGGCgGACGCuGUCgCGGGGCGCacugcGGCGUCu -3'
miRNA:   3'- -UCGgCUGUG-CGG-GCCUCGCG-----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 30377 0.67 0.218194
Target:  5'- gGGUgCGGCGCacuccGUCCGG-GCcCGGCGCCu -3'
miRNA:   3'- -UCG-GCUGUG-----CGGGCCuCGcGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.