miRNA display CGI


Results 121 - 140 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 30615 0.66 0.259033
Target:  5'- uGGCCGaACACGaaCUucAGCGCGGCGUa -3'
miRNA:   3'- -UCGGC-UGUGCg-GGccUCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 31520 0.68 0.182986
Target:  5'- uGGCCccaGCAgaGCCCaGAGCGCcGCGCUg -3'
miRNA:   3'- -UCGGc--UGUg-CGGGcCUCGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 31551 0.66 0.278365
Target:  5'- gGGCuCGACAUGCCaccuccagaugUGGAGUG-GGaUGCCu -3'
miRNA:   3'- -UCG-GCUGUGCGG-----------GCCUCGCgCC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 31970 0.74 0.068606
Target:  5'- gGGCUGGCgacugcccccguuACGCCUGGGGC-UGGCGCUg -3'
miRNA:   3'- -UCGGCUG-------------UGCGGGCCUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 32173 0.66 0.246764
Target:  5'- cGGCCaGGCuGCGCCaguGGuGGCGCGcGUGCUu -3'
miRNA:   3'- -UCGG-CUG-UGCGGg--CC-UCGCGC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 32219 0.67 0.229267
Target:  5'- cGCa-ACAcCGCCCaGAGCacGgGGCGCCg -3'
miRNA:   3'- uCGgcUGU-GCGGGcCUCG--CgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 32478 0.67 0.229267
Target:  5'- cGCCGucggcgucGCGgGCCCGGAGCGUcaucucguGGaagauGCCu -3'
miRNA:   3'- uCGGC--------UGUgCGGGCCUCGCG--------CCg----CGG- -5'
11432 3' -64.9 NC_003085.1 + 33094 0.66 0.265352
Target:  5'- uGCC--CGCGCCUGGAauGCcuCGGUGCCc -3'
miRNA:   3'- uCGGcuGUGCGGGCCU--CGc-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 33246 0.67 0.21283
Target:  5'- cAGCCGcgaugaggaGCACGgCgaGGAGCGCGGUcacgGCUc -3'
miRNA:   3'- -UCGGC---------UGUGCgGg-CCUCGCGCCG----CGG- -5'
11432 3' -64.9 NC_003085.1 + 33548 0.7 0.127365
Target:  5'- cGCCGucCACGCacgaCGGAccauGCGCGGCGaCa -3'
miRNA:   3'- uCGGCu-GUGCGg---GCCU----CGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 34162 0.72 0.094345
Target:  5'- gGGCuCGACGC-CCCGGgccagcaugacgcgGGCGCGGCGg- -3'
miRNA:   3'- -UCG-GCUGUGcGGGCC--------------UCGCGCCGCgg -5'
11432 3' -64.9 NC_003085.1 + 34237 0.67 0.218194
Target:  5'- gAGuuGGCGCaaguccaccucGCCCacuuccgcGGCGCGGCGCUg -3'
miRNA:   3'- -UCggCUGUG-----------CGGGcc------UCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 34544 0.66 0.246764
Target:  5'- cGGCCGcgaGCGCcaccagCCGGccCGCGuGCGCCg -3'
miRNA:   3'- -UCGGCug-UGCG------GGCCucGCGC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 36352 0.67 0.218194
Target:  5'- gAGCCcgcgcuCACGCaCCucAGCGCGGCGUg -3'
miRNA:   3'- -UCGGcu----GUGCG-GGccUCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 36431 0.78 0.032765
Target:  5'- gAGCCGGgacuCAcCGUgCGGAGgGCGGCGCCu -3'
miRNA:   3'- -UCGGCU----GU-GCGgGCCUCgCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 36507 0.7 0.137785
Target:  5'- uGCCGGgGCcuUCCGGA-CGCGGCGCg -3'
miRNA:   3'- uCGGCUgUGc-GGGCCUcGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 36845 0.7 0.134227
Target:  5'- uGUCaGAauccaGCGCCCGGGGCGCcacGCGCg -3'
miRNA:   3'- uCGG-CUg----UGCGGGCCUCGCGc--CGCGg -5'
11432 3' -64.9 NC_003085.1 + 37021 0.73 0.084731
Target:  5'- cGCUGACcuucagugGCGaCCCGGAcaccggccuguaccGCGCuGGCGCCg -3'
miRNA:   3'- uCGGCUG--------UGC-GGGCCU--------------CGCG-CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 37035 0.67 0.207581
Target:  5'- --aCGACACaGCCuccuCGGAGCGCaGCgGCCc -3'
miRNA:   3'- ucgGCUGUG-CGG----GCCUCGCGcCG-CGG- -5'
11432 3' -64.9 NC_003085.1 + 37678 1.11 0.000087
Target:  5'- cAGCCGACACGCCCGGAGCGCGGCGCCg -3'
miRNA:   3'- -UCGGCUGUGCGGGCCUCGCGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.