miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 22105 0.7 0.127365
Target:  5'- aAGCaGGC-CGCCCagcaGAGCcCGGCGCCg -3'
miRNA:   3'- -UCGgCUGuGCGGGc---CUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 22049 0.68 0.1896
Target:  5'- -aCCGGCgauuGCGCCCGcGGgcagguaccacgcgcGCGCGGUGUCg -3'
miRNA:   3'- ucGGCUG----UGCGGGC-CU---------------CGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 21498 0.66 0.271796
Target:  5'- uGGUgGACugGuuCCCcuuGGAGCccgucgucGCGGCGCUg -3'
miRNA:   3'- -UCGgCUGugC--GGG---CCUCG--------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 21461 0.69 0.156902
Target:  5'- uGGCUGACGuuCGCCgacaagggCGGccuGCGCGGCGUg -3'
miRNA:   3'- -UCGGCUGU--GCGG--------GCCu--CGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 20821 0.67 0.21283
Target:  5'- gGGUgGACGCcauCCUGGAugagGCGacCGGCGCCg -3'
miRNA:   3'- -UCGgCUGUGc--GGGCCU----CGC--GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 20598 0.71 0.120828
Target:  5'- uGCuCGGCAgCGCCgCGGAagucGgGCGGCGCg -3'
miRNA:   3'- uCG-GCUGU-GCGG-GCCU----CgCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 20332 0.68 0.192499
Target:  5'- aGGCgGACucaauCGCCUGGuuccGCGCcGCGUCg -3'
miRNA:   3'- -UCGgCUGu----GCGGGCCu---CGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 20049 0.66 0.255301
Target:  5'- cGCCGccCGCGCCCuccuGGAGCGggacauccgcuuccaCGcGCGCUg -3'
miRNA:   3'- uCGGCu-GUGCGGG----CCUCGC---------------GC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 19727 0.66 0.246764
Target:  5'- cGGCgGcCACGUCCuGGGCGaCGaCGCCg -3'
miRNA:   3'- -UCGgCuGUGCGGGcCUCGC-GCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 19687 0.66 0.265352
Target:  5'- -cCUGGCG-GCCCuGGAggcGCGCGGCGgCa -3'
miRNA:   3'- ucGGCUGUgCGGG-CCU---CGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 19396 0.69 0.169496
Target:  5'- gGGCCGGUACcccagcaagGCCC--AGgGCGGCGCCa -3'
miRNA:   3'- -UCGGCUGUG---------CGGGccUCgCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 19186 0.68 0.202443
Target:  5'- gAGUgCGGCAuucacgucCGCCUGGGGCGgCgggggcugGGCGCCg -3'
miRNA:   3'- -UCG-GCUGU--------GCGGGCCUCGC-G--------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 19060 0.69 0.169496
Target:  5'- --gCGGCGCGCggCGGAGCa-GGCGCCg -3'
miRNA:   3'- ucgGCUGUGCGg-GCCUCGcgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 17957 0.67 0.23498
Target:  5'- uGCUggGGCACcugaaGCgCCGGcAGCGCGG-GCCg -3'
miRNA:   3'- uCGG--CUGUG-----CG-GGCC-UCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 17927 0.69 0.148983
Target:  5'- uGCCu--GCGCCC--AGCGCGGCGCUc -3'
miRNA:   3'- uCGGcugUGCGGGccUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 17824 0.66 0.264715
Target:  5'- cGCCugugcGGCAgGCCCcuGGGGCagugcuggugcccGCaGGCGCCg -3'
miRNA:   3'- uCGG-----CUGUgCGGG--CCUCG-------------CG-CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 17215 0.67 0.229267
Target:  5'- uGGUCaGCGcCGCUgGuGAGCacGCGGCGCCc -3'
miRNA:   3'- -UCGGcUGU-GCGGgC-CUCG--CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 16531 0.66 0.265352
Target:  5'- -aCCGACACccuuuGCCCGaagugcagcGAcuccaacuGCGUGGCGCCc -3'
miRNA:   3'- ucGGCUGUG-----CGGGC---------CU--------CGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 16521 0.71 0.111605
Target:  5'- uGGCaGGCGCGCCUGuuGAGC-CGGuCGCCg -3'
miRNA:   3'- -UCGgCUGUGCGGGC--CUCGcGCC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 16338 0.66 0.278365
Target:  5'- gAGCCuGCgGCGCUagGGAGCGUucgacaGCGCCa -3'
miRNA:   3'- -UCGGcUG-UGCGGg-CCUCGCGc-----CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.