Results 81 - 100 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11432 | 3' | -64.9 | NC_003085.1 | + | 6744 | 0.68 | 0.202443 |
Target: 5'- uGGuCCGAC-UGCCCGGccUGCcGCGCCg -3' miRNA: 3'- -UC-GGCUGuGCGGGCCucGCGcCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 48130 | 0.68 | 0.202443 |
Target: 5'- cGCCaGCA-GUCUGGgcugccuccuccAGCGCGGCGUCg -3' miRNA: 3'- uCGGcUGUgCGGGCC------------UCGCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 40363 | 0.68 | 0.202443 |
Target: 5'- aAGCCGcUGCuGCCCGcGGCGCugacgccucuGGCGCUg -3' miRNA: 3'- -UCGGCuGUG-CGGGCcUCGCG----------CCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 45755 | 0.68 | 0.202443 |
Target: 5'- cGUCGuCACcaccaGCaCCGGA-CGCGGCGUCa -3' miRNA: 3'- uCGGCuGUG-----CG-GGCCUcGCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 25161 | 0.67 | 0.207062 |
Target: 5'- uGGCCGGCGaccgugGCCUGGuggcgguGGCGaUGaGCGCCa -3' miRNA: 3'- -UCGGCUGUg-----CGGGCC-------UCGC-GC-CGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 19396 | 0.69 | 0.169496 |
Target: 5'- gGGCCGGUACcccagcaagGCCC--AGgGCGGCGCCa -3' miRNA: 3'- -UCGGCUGUG---------CGGGccUCgCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 19060 | 0.69 | 0.169496 |
Target: 5'- --gCGGCGCGCggCGGAGCa-GGCGCCg -3' miRNA: 3'- ucgGCUGUGCGg-GCCUCGcgCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 40684 | 0.69 | 0.1652 |
Target: 5'- cGCCGGCgcagggggacgACGUCCGG-GUGCuggacGCGCCg -3' miRNA: 3'- uCGGCUG-----------UGCGGGCCuCGCGc----CGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 17927 | 0.69 | 0.148983 |
Target: 5'- uGCCu--GCGCCC--AGCGCGGCGCUc -3' miRNA: 3'- uCGGcugUGCGGGccUCGCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 39595 | 0.69 | 0.152896 |
Target: 5'- aAGCUGgaGCGCGUCgCGGAGCGCaccgagcaGGUgGCCg -3' miRNA: 3'- -UCGGC--UGUGCGG-GCCUCGCG--------CCG-CGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 25273 | 0.69 | 0.156094 |
Target: 5'- cGUCGGCGCGCCCGucuaccucaccGCGaCGGCcgGCCa -3' miRNA: 3'- uCGGCUGUGCGGGCcu---------CGC-GCCG--CGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 11587 | 0.69 | 0.156902 |
Target: 5'- cGCCuGGCugGaaCGGGGCaggGCGGCGCg -3' miRNA: 3'- uCGG-CUGugCggGCCUCG---CGCCGCGg -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 13791 | 0.69 | 0.156902 |
Target: 5'- aGGCgagCGugACGCCagucugcgUGGAG-GUGGCGCCa -3' miRNA: 3'- -UCG---GCugUGCGG--------GCCUCgCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 21461 | 0.69 | 0.156902 |
Target: 5'- uGGCUGACGuuCGCCgacaagggCGGccuGCGCGGCGUg -3' miRNA: 3'- -UCGGCUGU--GCGG--------GCCu--CGCGCCGCGg -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 28695 | 0.69 | 0.161003 |
Target: 5'- cGCgGACaACGCgCGGAGCuGC-GCGCUg -3' miRNA: 3'- uCGgCUG-UGCGgGCCUCG-CGcCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 14804 | 0.69 | 0.161003 |
Target: 5'- aGGCCGACAUccuccgcgagGCCaucgCGGAGUG-GuGCGCCa -3' miRNA: 3'- -UCGGCUGUG----------CGG----GCCUCGCgC-CGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 1559 | 0.69 | 0.161003 |
Target: 5'- aGGCCGugcGCGuCGCCUGcaguugcGGCGCGGCGUa -3' miRNA: 3'- -UCGGC---UGU-GCGGGCc------UCGCGCCGCGg -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 24841 | 0.69 | 0.16267 |
Target: 5'- cGCCGAgGCgcagauucucGCCUGGGccggcaaccucaccuGCaGCGGCGCCc -3' miRNA: 3'- uCGGCUgUG----------CGGGCCU---------------CG-CGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 37678 | 1.11 | 0.000087 |
Target: 5'- cAGCCGACACGCCCGGAGCGCGGCGCCg -3' miRNA: 3'- -UCGGCUGUGCGGGCCUCGCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 16338 | 0.66 | 0.278365 |
Target: 5'- gAGCCuGCgGCGCUagGGAGCGUucgacaGCGCCa -3' miRNA: 3'- -UCGGcUG-UGCGGg-CCUCGCGc-----CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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