miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 1280 0.66 0.252837
Target:  5'- gGGCCaccucguGCGCGCCgaaauccucaagCGuGAGCGCGaCGCCg -3'
miRNA:   3'- -UCGGc------UGUGCGG------------GC-CUCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 14632 0.66 0.252837
Target:  5'- cGCCuucuuGACGCGCUCGGucAGCGCcgaaGGCucccGCCc -3'
miRNA:   3'- uCGG-----CUGUGCGGGCC--UCGCG----CCG----CGG- -5'
11432 3' -64.9 NC_003085.1 + 3790 0.66 0.246764
Target:  5'- cGGCUGACggACGCCgaaGcGGCGaCGGUGCUg -3'
miRNA:   3'- -UCGGCUG--UGCGGg--CcUCGC-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 42524 0.66 0.246764
Target:  5'- aAGUCGACcgcccagcCGCCCGGGaUGCGGUGgaCCa -3'
miRNA:   3'- -UCGGCUGu-------GCGGGCCUcGCGCCGC--GG- -5'
11432 3' -64.9 NC_003085.1 + 1087 0.66 0.246764
Target:  5'- uGCuCGcCGCGCUCaGGAGCGC-GCGUg -3'
miRNA:   3'- uCG-GCuGUGCGGG-CCUCGCGcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 19727 0.66 0.246764
Target:  5'- cGGCgGcCACGUCCuGGGCGaCGaCGCCg -3'
miRNA:   3'- -UCGgCuGUGCGGGcCUCGC-GCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 26926 0.67 0.240812
Target:  5'- aGGCCG-UugGCCUGcauguacCGCGGCGCUu -3'
miRNA:   3'- -UCGGCuGugCGGGCcuc----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13562 0.67 0.23498
Target:  5'- uGGCCGugGCaugGCCCuGGGacucCGCGGC-CCg -3'
miRNA:   3'- -UCGGCugUG---CGGGcCUC----GCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 28181 0.66 0.259033
Target:  5'- gGGCCagGACgaaGUCUGG-GCGCGGCaCCa -3'
miRNA:   3'- -UCGG--CUGug-CGGGCCuCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 30615 0.66 0.259033
Target:  5'- uGGCCGaACACGaaCUucAGCGCGGCGUa -3'
miRNA:   3'- -UCGGC-UGUGCg-GGccUCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 37678 1.11 0.000087
Target:  5'- cAGCCGACACGCCCGGAGCGCGGCGCCg -3'
miRNA:   3'- -UCGGCUGUGCGGGCCUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 16338 0.66 0.278365
Target:  5'- gAGCCuGCgGCGCUagGGAGCGUucgacaGCGCCa -3'
miRNA:   3'- -UCGGcUG-UGCGGg-CCUCGCGc-----CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 9170 0.66 0.271796
Target:  5'- aGGgCGACGCuGCCCaG-GC-CGGCGCa -3'
miRNA:   3'- -UCgGCUGUG-CGGGcCuCGcGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 10654 0.66 0.271796
Target:  5'- uGCUcACACGCCUGGcugAGCGaCaGCGCa -3'
miRNA:   3'- uCGGcUGUGCGGGCC---UCGC-GcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 45909 0.66 0.265352
Target:  5'- cGcCCGGC-CGCCUuGAGCGUGGU-CCa -3'
miRNA:   3'- uC-GGCUGuGCGGGcCUCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 33094 0.66 0.265352
Target:  5'- uGCC--CGCGCCUGGAauGCcuCGGUGCCc -3'
miRNA:   3'- uCGGcuGUGCGGGCCU--CGc-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 1494 0.66 0.265352
Target:  5'- uGCuCGACGCgGCCCGuccGGCGCucgggcaagaGGCaGCCg -3'
miRNA:   3'- uCG-GCUGUG-CGGGCc--UCGCG----------CCG-CGG- -5'
11432 3' -64.9 NC_003085.1 + 14962 0.66 0.264715
Target:  5'- cGCCG-CACgGUCCGuGGUGCccugggaGGCGCCc -3'
miRNA:   3'- uCGGCuGUG-CGGGCcUCGCG-------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 49012 0.66 0.259033
Target:  5'- cGCCGGCugGCCCuccGCGCcGUGUg -3'
miRNA:   3'- uCGGCUGugCGGGccuCGCGcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 3919 0.66 0.259033
Target:  5'- gAGuuGACACGCCaGGcucgcGuCGCGG-GCCu -3'
miRNA:   3'- -UCggCUGUGCGGgCCu----C-GCGCCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.