miRNA display CGI


Results 141 - 160 of 186 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 45909 0.66 0.265352
Target:  5'- cGcCCGGC-CGCCUuGAGCGUGGU-CCa -3'
miRNA:   3'- uC-GGCUGuGCGGGcCUCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 10654 0.66 0.271796
Target:  5'- uGCUcACACGCCUGGcugAGCGaCaGCGCa -3'
miRNA:   3'- uCGGcUGUGCGGGCC---UCGC-GcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 9170 0.66 0.271796
Target:  5'- aGGgCGACGCuGCCCaG-GC-CGGCGCa -3'
miRNA:   3'- -UCgGCUGUG-CGGGcCuCGcGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 16338 0.66 0.278365
Target:  5'- gAGCCuGCgGCGCUagGGAGCGUucgacaGCGCCa -3'
miRNA:   3'- -UCGGcUG-UGCGGg-CCUCGCGc-----CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 45345 0.66 0.246764
Target:  5'- cGCUGGa--GUCCc-AGCGCGGCGCCc -3'
miRNA:   3'- uCGGCUgugCGGGccUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 41303 0.66 0.246764
Target:  5'- aAGCaccuuGACucguuCGCCUGauGCGCGGCGCUu -3'
miRNA:   3'- -UCGg----CUGu----GCGGGCcuCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 3790 0.66 0.246764
Target:  5'- cGGCUGACggACGCCgaaGcGGCGaCGGUGCUg -3'
miRNA:   3'- -UCGGCUG--UGCGGg--CcUCGC-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 40032 0.67 0.227577
Target:  5'- cGCCGGCACGUCCGcguCGUGGUagggaaagaugcucGCCu -3'
miRNA:   3'- uCGGCUGUGCGGGCcucGCGCCG--------------CGG- -5'
11432 3' -64.9 NC_003085.1 + 17215 0.67 0.229267
Target:  5'- uGGUCaGCGcCGCUgGuGAGCacGCGGCGCCc -3'
miRNA:   3'- -UCGGcUGU-GCGGgC-CUCG--CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 27324 0.67 0.229267
Target:  5'- gGGCCacCACcuuuggGUCCGGcuGCuGCGGCGCCg -3'
miRNA:   3'- -UCGGcuGUG------CGGGCCu-CG-CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 9078 0.67 0.229267
Target:  5'- uGCCGGCcaGCGCCaGaGGCGuCaGCGCCg -3'
miRNA:   3'- uCGGCUG--UGCGGgCcUCGC-GcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 32478 0.67 0.229267
Target:  5'- cGCCGucggcgucGCGgGCCCGGAGCGUcaucucguGGaagauGCCu -3'
miRNA:   3'- uCGGC--------UGUgCGGGCCUCGCG--------CCg----CGG- -5'
11432 3' -64.9 NC_003085.1 + 47363 0.67 0.229267
Target:  5'- cGCCGAUG-GCgCCGaGGUGCGGCGgCu -3'
miRNA:   3'- uCGGCUGUgCG-GGCcUCGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 45402 0.67 0.234404
Target:  5'- aGGCgGA-GCGCCgucagcgaaagcaUGGGGCGCGGUGgCg -3'
miRNA:   3'- -UCGgCUgUGCGG-------------GCCUCGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 11103 0.67 0.234404
Target:  5'- cGCCGGCGgcauucgUGCCCaGGAaguuGCGC-GUGCCa -3'
miRNA:   3'- uCGGCUGU-------GCGGG-CCU----CGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13562 0.67 0.23498
Target:  5'- uGGCCGugGCaugGCCCuGGGacucCGCGGC-CCg -3'
miRNA:   3'- -UCGGCugUG---CGGGcCUC----GCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 26926 0.67 0.240812
Target:  5'- aGGCCG-UugGCCUGcauguacCGCGGCGCUu -3'
miRNA:   3'- -UCGGCuGugCGGGCcuc----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 19727 0.66 0.246764
Target:  5'- cGGCgGcCACGUCCuGGGCGaCGaCGCCg -3'
miRNA:   3'- -UCGgCuGUGCGGGcCUCGC-GCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 1087 0.66 0.246764
Target:  5'- uGCuCGcCGCGCUCaGGAGCGC-GCGUg -3'
miRNA:   3'- uCG-GCuGUGCGGG-CCUCGCGcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 42524 0.66 0.246764
Target:  5'- aAGUCGACcgcccagcCGCCCGGGaUGCGGUGgaCCa -3'
miRNA:   3'- -UCGGCUGu-------GCGGGCCUcGCGCCGC--GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.