miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 13452 0.67 0.218194
Target:  5'- uGGCCGcCAucCGCCaagcugucgCGGAGCGUuuccugGGCGUCg -3'
miRNA:   3'- -UCGGCuGU--GCGG---------GCCUCGCG------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 42524 0.66 0.246764
Target:  5'- aAGUCGACcgcccagcCGCCCGGGaUGCGGUGgaCCa -3'
miRNA:   3'- -UCGGCUGu-------GCGGGCCUcGCGCCGC--GG- -5'
11432 3' -64.9 NC_003085.1 + 9170 0.66 0.271796
Target:  5'- aGGgCGACGCuGCCCaG-GC-CGGCGCa -3'
miRNA:   3'- -UCgGCUGUG-CGGGcCuCGcGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 7554 0.67 0.223672
Target:  5'- gGGCU-ACACGCCCgagaaugcgcuGGAGuCGCuGCGUCa -3'
miRNA:   3'- -UCGGcUGUGCGGG-----------CCUC-GCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 16338 0.66 0.278365
Target:  5'- gAGCCuGCgGCGCUagGGAGCGUucgacaGCGCCa -3'
miRNA:   3'- -UCGGcUG-UGCGGg-CCUCGCGc-----CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 7616 0.69 0.17389
Target:  5'- aGGUgGACcaGCGCCgggcgggacucaUGGGGCgcuuggGCGGCGCCg -3'
miRNA:   3'- -UCGgCUG--UGCGG------------GCCUCG------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 45909 0.66 0.265352
Target:  5'- cGcCCGGC-CGCCUuGAGCGUGGU-CCa -3'
miRNA:   3'- uC-GGCUGuGCGGGcCUCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 38691 0.68 0.187689
Target:  5'- gAGgUGGCAUGCCCccAGCGUcuucccGGCGCCc -3'
miRNA:   3'- -UCgGCUGUGCGGGccUCGCG------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 20332 0.68 0.192499
Target:  5'- aGGCgGACucaauCGCCUGGuuccGCGCcGCGUCg -3'
miRNA:   3'- -UCGgCUGu----GCGGGCCu---CGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 1686 0.68 0.202443
Target:  5'- uGGCCGAagcacaaguCGCCUGcGAGCGCcuGGcCGUCg -3'
miRNA:   3'- -UCGGCUgu-------GCGGGC-CUCGCG--CC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 24657 0.67 0.207581
Target:  5'- aAGCCG-CGCGCCgCGacGGGCugaGCGGCaCCa -3'
miRNA:   3'- -UCGGCuGUGCGG-GC--CUCG---CGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 33246 0.67 0.21283
Target:  5'- cAGCCGcgaugaggaGCACGgCgaGGAGCGCGGUcacgGCUc -3'
miRNA:   3'- -UCGGC---------UGUGCgGg-CCUCGCGCCG----CGG- -5'
11432 3' -64.9 NC_003085.1 + 36352 0.67 0.218194
Target:  5'- gAGCCcgcgcuCACGCaCCucAGCGCGGCGUg -3'
miRNA:   3'- -UCGGcu----GUGCG-GGccUCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 40032 0.67 0.227577
Target:  5'- cGCCGGCACGUCCGcguCGUGGUagggaaagaugcucGCCu -3'
miRNA:   3'- uCGGCUGUGCGGGCcucGCGCCG--------------CGG- -5'
11432 3' -64.9 NC_003085.1 + 9078 0.67 0.229267
Target:  5'- uGCCGGCcaGCGCCaGaGGCGuCaGCGCCg -3'
miRNA:   3'- uCGGCUG--UGCGGgCcUCGC-GcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 11103 0.67 0.234404
Target:  5'- cGCCGGCGgcauucgUGCCCaGGAaguuGCGC-GUGCCa -3'
miRNA:   3'- uCGGCUGU-------GCGGG-CCU----CGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 19727 0.66 0.246764
Target:  5'- cGGCgGcCACGUCCuGGGCGaCGaCGCCg -3'
miRNA:   3'- -UCGgCuGUGCGGGcCUCGC-GCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 45345 0.66 0.246764
Target:  5'- cGCUGGa--GUCCc-AGCGCGGCGCCc -3'
miRNA:   3'- uCGGCUgugCGGGccUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28181 0.66 0.259033
Target:  5'- gGGCCagGACgaaGUCUGG-GCGCGGCaCCa -3'
miRNA:   3'- -UCGG--CUGug-CGGGCCuCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 14962 0.66 0.264715
Target:  5'- cGCCG-CACgGUCCGuGGUGCccugggaGGCGCCc -3'
miRNA:   3'- uCGGCuGUG-CGGGCcUCGCG-------CCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.