miRNA display CGI


Results 61 - 80 of 186 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 36352 0.67 0.218194
Target:  5'- gAGCCcgcgcuCACGCaCCucAGCGCGGCGUg -3'
miRNA:   3'- -UCGGcu----GUGCG-GGccUCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 10056 0.67 0.2123
Target:  5'- aGGCUgGAUACgaGCCUGGAgGCGaagagguUGGCGCCg -3'
miRNA:   3'- -UCGG-CUGUG--CGGGCCU-CGC-------GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 33094 0.66 0.265352
Target:  5'- uGCC--CGCGCCUGGAauGCcuCGGUGCCc -3'
miRNA:   3'- uCGGcuGUGCGGGCCU--CGc-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 49012 0.66 0.259033
Target:  5'- cGCCGGCugGCCCuccGCGCcGUGUg -3'
miRNA:   3'- uCGGCUGugCGGGccuCGCGcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 14632 0.66 0.252837
Target:  5'- cGCCuucuuGACGCGCUCGGucAGCGCcgaaGGCucccGCCc -3'
miRNA:   3'- uCGG-----CUGUGCGGGCC--UCGCG----CCG----CGG- -5'
11432 3' -64.9 NC_003085.1 + 41303 0.66 0.246764
Target:  5'- aAGCaccuuGACucguuCGCCUGauGCGCGGCGCUu -3'
miRNA:   3'- -UCGg----CUGu----GCGGGCcuCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 26926 0.67 0.240812
Target:  5'- aGGCCG-UugGCCUGcauguacCGCGGCGCUu -3'
miRNA:   3'- -UCGGCuGugCGGGCcuc----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 45402 0.67 0.234404
Target:  5'- aGGCgGA-GCGCCgucagcgaaagcaUGGGGCGCGGUGgCg -3'
miRNA:   3'- -UCGgCUgUGCGG-------------GCCUCGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 27324 0.67 0.229267
Target:  5'- gGGCCacCACcuuuggGUCCGGcuGCuGCGGCGCCg -3'
miRNA:   3'- -UCGGcuGUG------CGGGCCu-CG-CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 42704 0.67 0.223672
Target:  5'- cGCCGuC-CGCCac-GGCGCGGCagGCCg -3'
miRNA:   3'- uCGGCuGuGCGGgccUCGCGCCG--CGG- -5'
11432 3' -64.9 NC_003085.1 + 34162 0.72 0.094345
Target:  5'- gGGCuCGACGC-CCCGGgccagcaugacgcgGGCGCGGCGg- -3'
miRNA:   3'- -UCG-GCUGUGcGGGCC--------------UCGCGCCGCgg -5'
11432 3' -64.9 NC_003085.1 + 16521 0.71 0.111605
Target:  5'- uGGCaGGCGCGCCUGuuGAGC-CGGuCGCCg -3'
miRNA:   3'- -UCGgCUGUGCGGGC--CUCGcGCC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 38804 0.67 0.206028
Target:  5'- cGCCGGCA-GCCCcgaGGAcuuuggcugccucuGC-CGGCGCCc -3'
miRNA:   3'- uCGGCUGUgCGGG---CCU--------------CGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 39294 0.68 0.201936
Target:  5'- cAGCCGGgucCGCCCGGuccuCGCGGUacuccccGCCg -3'
miRNA:   3'- -UCGGCUgu-GCGGGCCuc--GCGCCG-------CGG- -5'
11432 3' -64.9 NC_003085.1 + 38691 0.68 0.187689
Target:  5'- gAGgUGGCAUGCCCccAGCGUcuucccGGCGCCc -3'
miRNA:   3'- -UCgGCUGUGCGGGccUCGCG------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 7616 0.69 0.17389
Target:  5'- aGGUgGACcaGCGCCgggcgggacucaUGGGGCgcuuggGCGGCGCCg -3'
miRNA:   3'- -UCGgCUG--UGCGG------------GCCUCG------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 43896 0.69 0.156902
Target:  5'- uAGaCGugGCGCaCCGu--CGCGGCGCCa -3'
miRNA:   3'- -UCgGCugUGCG-GGCcucGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 12216 0.7 0.145161
Target:  5'- uGGUcugCGACGCcuGCCUuGAGCGCGGCGgCu -3'
miRNA:   3'- -UCG---GCUGUG--CGGGcCUCGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 33548 0.7 0.127365
Target:  5'- cGCCGucCACGCacgaCGGAccauGCGCGGCGaCa -3'
miRNA:   3'- uCGGCu-GUGCGg---GCCU----CGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 42347 0.71 0.120828
Target:  5'- cAGCCGGCGCGUgaccgucuuCCGGccGGCGaggauGGCGCUc -3'
miRNA:   3'- -UCGGCUGUGCG---------GGCC--UCGCg----CCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.