miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 45402 0.67 0.234404
Target:  5'- aGGCgGA-GCGCCgucagcgaaagcaUGGGGCGCGGUGgCg -3'
miRNA:   3'- -UCGgCUgUGCGG-------------GCCUCGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 1087 0.66 0.246764
Target:  5'- uGCuCGcCGCGCUCaGGAGCGC-GCGUg -3'
miRNA:   3'- uCG-GCuGUGCGGG-CCUCGCGcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 41303 0.66 0.246764
Target:  5'- aAGCaccuuGACucguuCGCCUGauGCGCGGCGCUu -3'
miRNA:   3'- -UCGg----CUGu----GCGGGCcuCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28181 0.66 0.259033
Target:  5'- gGGCCagGACgaaGUCUGG-GCGCGGCaCCa -3'
miRNA:   3'- -UCGG--CUGug-CGGGCCuCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 49012 0.66 0.259033
Target:  5'- cGCCGGCugGCCCuccGCGCcGUGUg -3'
miRNA:   3'- uCGGCUGugCGGGccuCGCGcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 7460 0.68 0.192499
Target:  5'- uGCCGACGcCGCCgGGgcaggaacacGGCGaGGCGUg -3'
miRNA:   3'- uCGGCUGU-GCGGgCC----------UCGCgCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 31520 0.68 0.182986
Target:  5'- uGGCCccaGCAgaGCCCaGAGCGCcGCGCUg -3'
miRNA:   3'- -UCGGc--UGUg-CGGGcCUCGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 8975 0.69 0.173003
Target:  5'- cGGCuCGAgACGCCCgccagcagcgacaGGAGUcccaccaGUGGCGCUa -3'
miRNA:   3'- -UCG-GCUgUGCGGG-------------CCUCG-------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 15065 0.67 0.218194
Target:  5'- aAGCCucguggGAgUugGCCCuggaGGAGgGaCGGCGCCu -3'
miRNA:   3'- -UCGG------CU-GugCGGG----CCUCgC-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 497 0.67 0.223672
Target:  5'- aGGCUGAgggccUGCGUuuGGAGC-CGGUGUCu -3'
miRNA:   3'- -UCGGCU-----GUGCGggCCUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28520 0.67 0.223672
Target:  5'- cGGUgGACGCGUCaGGGcgaaucCGCGGCGUCg -3'
miRNA:   3'- -UCGgCUGUGCGGgCCUc-----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 32219 0.67 0.229267
Target:  5'- cGCa-ACAcCGCCCaGAGCacGgGGCGCCg -3'
miRNA:   3'- uCGgcUGU-GCGGGcCUCG--CgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 25273 0.69 0.156094
Target:  5'- cGUCGGCGCGCCCGucuaccucaccGCGaCGGCcgGCCa -3'
miRNA:   3'- uCGGCUGUGCGGGCcu---------CGC-GCCG--CGG- -5'
11432 3' -64.9 NC_003085.1 + 11587 0.69 0.156902
Target:  5'- cGCCuGGCugGaaCGGGGCaggGCGGCGCg -3'
miRNA:   3'- uCGG-CUGugCggGCCUCG---CGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 13791 0.69 0.156902
Target:  5'- aGGCgagCGugACGCCagucugcgUGGAG-GUGGCGCCa -3'
miRNA:   3'- -UCG---GCugUGCGG--------GCCUCgCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 17957 0.67 0.23498
Target:  5'- uGCUggGGCACcugaaGCgCCGGcAGCGCGG-GCCg -3'
miRNA:   3'- uCGG--CUGUG-----CG-GGCC-UCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 43746 0.67 0.229267
Target:  5'- gAGCCGGgucCGC-CCCGGuggugGGCGCGG-GCUu -3'
miRNA:   3'- -UCGGCU---GUGcGGGCC-----UCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 22761 0.72 0.097686
Target:  5'- cGCCGACgACGCCCGc--CGCGGUGgCg -3'
miRNA:   3'- uCGGCUG-UGCGGGCcucGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 3421 0.67 0.229267
Target:  5'- cAGCCGuauCGCGCCUgcuGGAGaacuucgaGCaGGCGaCCa -3'
miRNA:   3'- -UCGGCu--GUGCGGG---CCUCg-------CG-CCGC-GG- -5'
11432 3' -64.9 NC_003085.1 + 10617 0.67 0.229267
Target:  5'- uGGCCaauGCACcUCCGGcuguGUGgGGCGCCg -3'
miRNA:   3'- -UCGGc--UGUGcGGGCCu---CGCgCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.