miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 2096 0.67 0.21283
Target:  5'- cAGCCGccGCAC-CUCGGcGCcauCGGCGCCc -3'
miRNA:   3'- -UCGGC--UGUGcGGGCCuCGc--GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 20821 0.67 0.21283
Target:  5'- gGGUgGACGCcauCCUGGAugagGCGacCGGCGCCg -3'
miRNA:   3'- -UCGgCUGUGc--GGGCCU----CGC--GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 17957 0.67 0.23498
Target:  5'- uGCUggGGCACcugaaGCgCCGGcAGCGCGG-GCCg -3'
miRNA:   3'- uCGG--CUGUG-----CG-GGCC-UCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 43746 0.67 0.229267
Target:  5'- gAGCCGGgucCGC-CCCGGuggugGGCGCGG-GCUu -3'
miRNA:   3'- -UCGGCU---GUGcGGGCC-----UCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 13914 0.67 0.218194
Target:  5'- cGGCguGCGCGCguuucggaCGGGGCGCG-CGCCg -3'
miRNA:   3'- -UCGgcUGUGCGg-------GCCUCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 10617 0.67 0.229267
Target:  5'- uGGCCaauGCACcUCCGGcuguGUGgGGCGCCg -3'
miRNA:   3'- -UCGGc--UGUGcGGGCCu---CGCgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 32219 0.67 0.229267
Target:  5'- cGCa-ACAcCGCCCaGAGCacGgGGCGCCg -3'
miRNA:   3'- uCGgcUGU-GCGGGcCUCG--CgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28520 0.67 0.223672
Target:  5'- cGGUgGACGCGUCaGGGcgaaucCGCGGCGUCg -3'
miRNA:   3'- -UCGgCUGUGCGGgCCUc-----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 25161 0.67 0.207062
Target:  5'- uGGCCGGCGaccgugGCCUGGuggcgguGGCGaUGaGCGCCa -3'
miRNA:   3'- -UCGGCUGUg-----CGGGCC-------UCGC-GC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 45755 0.68 0.202443
Target:  5'- cGUCGuCACcaccaGCaCCGGA-CGCGGCGUCa -3'
miRNA:   3'- uCGGCuGUG-----CG-GGCCUcGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 24984 0.7 0.130412
Target:  5'- uGCCgcagaacaucucgGACACGUCCGcGGUGCagaaGGCGCCg -3'
miRNA:   3'- uCGG-------------CUGUGCGGGCcUCGCG----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 47592 0.7 0.134227
Target:  5'- gGGCCGAUgaGCGCaagaCGGAGC-CG-CGCCu -3'
miRNA:   3'- -UCGGCUG--UGCGg---GCCUCGcGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 4401 0.69 0.148983
Target:  5'- -uCCGGCACGCUgGGcGCGCaucuacuccGGUGCCc -3'
miRNA:   3'- ucGGCUGUGCGGgCCuCGCG---------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 17927 0.69 0.148983
Target:  5'- uGCCu--GCGCCC--AGCGCGGCGCUc -3'
miRNA:   3'- uCGGcugUGCGGGccUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 39595 0.69 0.152896
Target:  5'- aAGCUGgaGCGCGUCgCGGAGCGCaccgagcaGGUgGCCg -3'
miRNA:   3'- -UCGGC--UGUGCGG-GCCUCGCG--------CCG-CGG- -5'
11432 3' -64.9 NC_003085.1 + 25273 0.69 0.156094
Target:  5'- cGUCGGCGCGCCCGucuaccucaccGCGaCGGCcgGCCa -3'
miRNA:   3'- uCGGCUGUGCGGGCcu---------CGC-GCCG--CGG- -5'
11432 3' -64.9 NC_003085.1 + 11587 0.69 0.156902
Target:  5'- cGCCuGGCugGaaCGGGGCaggGCGGCGCg -3'
miRNA:   3'- uCGG-CUGugCggGCCUCG---CGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 13791 0.69 0.156902
Target:  5'- aGGCgagCGugACGCCagucugcgUGGAG-GUGGCGCCa -3'
miRNA:   3'- -UCG---GCugUGCGG--------GCCUCgCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 3421 0.67 0.229267
Target:  5'- cAGCCGuauCGCGCCUgcuGGAGaacuucgaGCaGGCGaCCa -3'
miRNA:   3'- -UCGGCu--GUGCGGG---CCUCg-------CG-CCGC-GG- -5'
11432 3' -64.9 NC_003085.1 + 15065 0.67 0.218194
Target:  5'- aAGCCucguggGAgUugGCCCuggaGGAGgGaCGGCGCCu -3'
miRNA:   3'- -UCGG------CU-GugCGGG----CCUCgC-GCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.