Results 121 - 140 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11432 | 3' | -64.9 | NC_003085.1 | + | 32219 | 0.67 | 0.229267 |
Target: 5'- cGCa-ACAcCGCCCaGAGCacGgGGCGCCg -3' miRNA: 3'- uCGgcUGU-GCGGGcCUCG--CgCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 10617 | 0.67 | 0.229267 |
Target: 5'- uGGCCaauGCACcUCCGGcuguGUGgGGCGCCg -3' miRNA: 3'- -UCGGc--UGUGcGGGCCu---CGCgCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 3421 | 0.67 | 0.229267 |
Target: 5'- cAGCCGuauCGCGCCUgcuGGAGaacuucgaGCaGGCGaCCa -3' miRNA: 3'- -UCGGCu--GUGCGGG---CCUCg-------CG-CCGC-GG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 48130 | 0.68 | 0.202443 |
Target: 5'- cGCCaGCA-GUCUGGgcugccuccuccAGCGCGGCGUCg -3' miRNA: 3'- uCGGcUGUgCGGGCC------------UCGCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 6744 | 0.68 | 0.202443 |
Target: 5'- uGGuCCGAC-UGCCCGGccUGCcGCGCCg -3' miRNA: 3'- -UC-GGCUGuGCGGGCCucGCGcCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 13970 | 0.68 | 0.1896 |
Target: 5'- uGGcCCGAaGCGCCCGuugcucgguuggaccGAGCGCGaacuCGCCa -3' miRNA: 3'- -UC-GGCUgUGCGGGC---------------CUCGCGCc---GCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 31551 | 0.66 | 0.278365 |
Target: 5'- gGGCuCGACAUGCCaccuccagaugUGGAGUG-GGaUGCCu -3' miRNA: 3'- -UCG-GCUGUGCGG-----------GCCUCGCgCC-GCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 48362 | 0.66 | 0.277702 |
Target: 5'- -uCCGagugacucacGCGCGCuCCuGAGCGCGGCgagcagcGCCg -3' miRNA: 3'- ucGGC----------UGUGCG-GGcCUCGCGCCG-------CGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 5518 | 0.66 | 0.277702 |
Target: 5'- cGUCGGCACGUgcucgcaCUGGuGCGCGaaguGCGCg -3' miRNA: 3'- uCGGCUGUGCG-------GGCCuCGCGC----CGCGg -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 28185 | 0.66 | 0.274408 |
Target: 5'- uGCaGGCGCGCUaucgcuacgacuucgCGGAGU-UGGCGCCa -3' miRNA: 3'- uCGgCUGUGCGG---------------GCCUCGcGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 6671 | 0.66 | 0.271796 |
Target: 5'- cGUgGACGCcucccugaugGCCCuGGAGCggcuuGCGGcCGCCc -3' miRNA: 3'- uCGgCUGUG----------CGGG-CCUCG-----CGCC-GCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 21498 | 0.66 | 0.271796 |
Target: 5'- uGGUgGACugGuuCCCcuuGGAGCccgucgucGCGGCGCUg -3' miRNA: 3'- -UCGgCUGugC--GGG---CCUCG--------CGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 39258 | 0.66 | 0.271146 |
Target: 5'- gGGCCGcagcaugugcuGCGCGCCuccucuaCGGcGCuGCGGUGUCu -3' miRNA: 3'- -UCGGC-----------UGUGCGG-------GCCuCG-CGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 39664 | 0.66 | 0.265352 |
Target: 5'- gAG-CGGCGCGCgCGuGAGCaGCagcaGGCGCUg -3' miRNA: 3'- -UCgGCUGUGCGgGC-CUCG-CG----CCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 16531 | 0.66 | 0.265352 |
Target: 5'- -aCCGACACccuuuGCCCGaagugcagcGAcuccaacuGCGUGGCGCCc -3' miRNA: 3'- ucGGCUGUG-----CGGGC---------CU--------CGCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 3933 | 0.66 | 0.265352 |
Target: 5'- aAGCCGA-GCGCCgCGGcgauguuGuCGCGGC-CCg -3' miRNA: 3'- -UCGGCUgUGCGG-GCCu------C-GCGCCGcGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 19687 | 0.66 | 0.265352 |
Target: 5'- -cCUGGCG-GCCCuGGAggcGCGCGGCGgCa -3' miRNA: 3'- ucGGCUGUgCGGG-CCU---CGCGCCGCgG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 12598 | 0.66 | 0.265352 |
Target: 5'- uGGuCCGACugACGCgCGuGGCGCcccgGGCGCUg -3' miRNA: 3'- -UC-GGCUG--UGCGgGCcUCGCG----CCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 11036 | 0.66 | 0.265352 |
Target: 5'- cGCCGAgaCAgGCCCGGAcuuGUGaCGG-GCUa -3' miRNA: 3'- uCGGCU--GUgCGGGCCU---CGC-GCCgCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 48225 | 0.68 | 0.181595 |
Target: 5'- uGCCucCGCaGCCCcuccaacuccuccaGcAGCGCGGCGCCg -3' miRNA: 3'- uCGGcuGUG-CGGG--------------CcUCGCGCCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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