miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 42524 0.66 0.246764
Target:  5'- aAGUCGACcgcccagcCGCCCGGGaUGCGGUGgaCCa -3'
miRNA:   3'- -UCGGCUGu-------GCGGGCCUcGCGCCGC--GG- -5'
11432 3' -64.9 NC_003085.1 + 1087 0.66 0.246764
Target:  5'- uGCuCGcCGCGCUCaGGAGCGC-GCGUg -3'
miRNA:   3'- uCG-GCuGUGCGGG-CCUCGCGcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 19727 0.66 0.246764
Target:  5'- cGGCgGcCACGUCCuGGGCGaCGaCGCCg -3'
miRNA:   3'- -UCGgCuGUGCGGGcCUCGC-GCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 3790 0.66 0.246764
Target:  5'- cGGCUGACggACGCCgaaGcGGCGaCGGUGCUg -3'
miRNA:   3'- -UCGGCUG--UGCGGg--CcUCGC-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 32173 0.66 0.246764
Target:  5'- cGGCCaGGCuGCGCCaguGGuGGCGCGcGUGCUu -3'
miRNA:   3'- -UCGG-CUG-UGCGGg--CC-UCGCGC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 34544 0.66 0.246764
Target:  5'- cGGCCGcgaGCGCcaccagCCGGccCGCGuGCGCCg -3'
miRNA:   3'- -UCGGCug-UGCG------GGCCucGCGC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 7251 0.66 0.246764
Target:  5'- cAGCCcgggGACAgGCUCugggugaaGGAGaCGUGGCGCa -3'
miRNA:   3'- -UCGG----CUGUgCGGG--------CCUC-GCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 29182 0.66 0.246764
Target:  5'- cGCaguGGCAgCGCCgcgaggacgCGGAGCGCacGCGCCu -3'
miRNA:   3'- uCGg--CUGU-GCGG---------GCCUCGCGc-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 48593 0.66 0.246163
Target:  5'- cGCC-AC-CGCCgGGAagGCGCgagcgaugcgcuuGGCGCCg -3'
miRNA:   3'- uCGGcUGuGCGGgCCU--CGCG-------------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 26926 0.67 0.240812
Target:  5'- aGGCCG-UugGCCUGcauguacCGCGGCGCUu -3'
miRNA:   3'- -UCGGCuGugCGGGCcuc----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 43101 0.67 0.240812
Target:  5'- cGGCCGccagcaGCACGCCgGGAacagccuugGCGUagaGcGCGCCc -3'
miRNA:   3'- -UCGGC------UGUGCGGgCCU---------CGCG---C-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 432 0.67 0.240812
Target:  5'- cGGCCGcgucuacgagucACACGgCgCGGAGgGCcagccGGCGCUg -3'
miRNA:   3'- -UCGGC------------UGUGCgG-GCCUCgCG-----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 24199 0.67 0.240812
Target:  5'- cGCCGAgUACGCgCUGaAGCaguacGCGGUGCCc -3'
miRNA:   3'- uCGGCU-GUGCG-GGCcUCG-----CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 17957 0.67 0.23498
Target:  5'- uGCUggGGCACcugaaGCgCCGGcAGCGCGG-GCCg -3'
miRNA:   3'- uCGG--CUGUG-----CG-GGCC-UCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 22800 0.67 0.23498
Target:  5'- cGGCCG-CuccCGCCCaGGAgGCGaCGGCcCCg -3'
miRNA:   3'- -UCGGCuGu--GCGGG-CCU-CGC-GCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 39950 0.67 0.23498
Target:  5'- gAGCCGAUGa-CCCGccGCGCGcCGCCa -3'
miRNA:   3'- -UCGGCUGUgcGGGCcuCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 44252 0.67 0.23498
Target:  5'- gGGCCGcguCGCGCUCGGA-CuCGGCcuGCCu -3'
miRNA:   3'- -UCGGCu--GUGCGGGCCUcGcGCCG--CGG- -5'
11432 3' -64.9 NC_003085.1 + 13562 0.67 0.23498
Target:  5'- uGGCCGugGCaugGCCCuGGGacucCGCGGC-CCg -3'
miRNA:   3'- -UCGGCugUG---CGGGcCUC----GCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 11103 0.67 0.234404
Target:  5'- cGCCGGCGgcauucgUGCCCaGGAaguuGCGC-GUGCCa -3'
miRNA:   3'- uCGGCUGU-------GCGGG-CCU----CGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 45402 0.67 0.234404
Target:  5'- aGGCgGA-GCGCCgucagcgaaagcaUGGGGCGCGGUGgCg -3'
miRNA:   3'- -UCGgCUgUGCGG-------------GCCUCGCGCCGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.