miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11433 5' -53.5 NC_003085.1 + 42011 0.66 0.799467
Target:  5'- cCCGGCGgcG---UCGGCACGGaCGAgGg -3'
miRNA:   3'- -GGUCGCaaCaagAGCCGUGUC-GCUgU- -5'
11433 5' -53.5 NC_003085.1 + 30785 0.66 0.777458
Target:  5'- aCCGGCGUcacccucagcaggagUGcgCUCgcacagaugcgcgggGGCACGGCGAa- -3'
miRNA:   3'- -GGUCGCA---------------ACaaGAG---------------CCGUGUCGCUgu -5'
11433 5' -53.5 NC_003085.1 + 30717 0.66 0.769261
Target:  5'- uCCAGCGgcGgcUUCGGCAUgcuGCG-CAg -3'
miRNA:   3'- -GGUCGCaaCaaGAGCCGUGu--CGCuGU- -5'
11433 5' -53.5 NC_003085.1 + 44959 0.66 0.76823
Target:  5'- cCCAGCGUcucgacucguugcUG-UCUUgaguugggcgGGCACGGCGAa- -3'
miRNA:   3'- -GGUCGCA-------------ACaAGAG----------CCGUGUCGCUgu -5'
11433 5' -53.5 NC_003085.1 + 26889 0.67 0.746256
Target:  5'- gCCGGUGggUGgacucaacaccgUCUCGGCggGCAGCGcCAu -3'
miRNA:   3'- -GGUCGCa-ACa-----------AGAGCCG--UGUCGCuGU- -5'
11433 5' -53.5 NC_003085.1 + 45828 0.67 0.726996
Target:  5'- gCAGCGUcccUCUCGGCcagccagucGCGGCGcACGu -3'
miRNA:   3'- gGUCGCAacaAGAGCCG---------UGUCGC-UGU- -5'
11433 5' -53.5 NC_003085.1 + 37739 0.67 0.720502
Target:  5'- cCCAGCGUcgGggagUCUguacaacuuccgcgcUGGUACAGCGAa- -3'
miRNA:   3'- -GGUCGCAa-Ca---AGA---------------GCCGUGUCGCUgu -5'
11433 5' -53.5 NC_003085.1 + 32244 0.67 0.705226
Target:  5'- gCAGCGag--UCUUGGUACAGCGcCc -3'
miRNA:   3'- gGUCGCaacaAGAGCCGUGUCGCuGu -5'
11433 5' -53.5 NC_003085.1 + 34434 0.68 0.694224
Target:  5'- gCGGC-UUGggC-CGGCcCAGCGGCAa -3'
miRNA:   3'- gGUCGcAACaaGaGCCGuGUCGCUGU- -5'
11433 5' -53.5 NC_003085.1 + 23552 0.69 0.627309
Target:  5'- uCCAGgGcgcugCUCGGCGCGGCGuuGCGa -3'
miRNA:   3'- -GGUCgCaacaaGAGCCGUGUCGC--UGU- -5'
11433 5' -53.5 NC_003085.1 + 29531 0.69 0.582636
Target:  5'- aCCAGCG----UCUUGGCGCGggcgucguGCGGCAg -3'
miRNA:   3'- -GGUCGCaacaAGAGCCGUGU--------CGCUGU- -5'
11433 5' -53.5 NC_003085.1 + 23583 0.7 0.571552
Target:  5'- -aAGCGcg--UC-CGGCACGGCGGCGa -3'
miRNA:   3'- ggUCGCaacaAGaGCCGUGUCGCUGU- -5'
11433 5' -53.5 NC_003085.1 + 24555 0.7 0.560518
Target:  5'- gCgAGCGcUGUUaCUCGGCGaugaGGCGGCc -3'
miRNA:   3'- -GgUCGCaACAA-GAGCCGUg---UCGCUGu -5'
11433 5' -53.5 NC_003085.1 + 29013 0.72 0.424982
Target:  5'- uCCAGCGg----CUCGcGCGCGGCgGACAu -3'
miRNA:   3'- -GGUCGCaacaaGAGC-CGUGUCG-CUGU- -5'
11433 5' -53.5 NC_003085.1 + 25439 0.74 0.360525
Target:  5'- -uGGCGUUGUUCUUGGUgacguuguCGGCGAUg -3'
miRNA:   3'- ggUCGCAACAAGAGCCGu-------GUCGCUGu -5'
11433 5' -53.5 NC_003085.1 + 41210 0.77 0.233874
Target:  5'- -aGGCGUUGgacugCUCuGGCACGGUGACGu -3'
miRNA:   3'- ggUCGCAACaa---GAG-CCGUGUCGCUGU- -5'
11433 5' -53.5 NC_003085.1 + 37095 1.1 0.001142
Target:  5'- uCCAGCGUUGUUCUCGGCACAGCGACAc -3'
miRNA:   3'- -GGUCGCAACAAGAGCCGUGUCGCUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.