Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11433 | 5' | -53.5 | NC_003085.1 | + | 42011 | 0.66 | 0.799467 |
Target: 5'- cCCGGCGgcG---UCGGCACGGaCGAgGg -3' miRNA: 3'- -GGUCGCaaCaagAGCCGUGUC-GCUgU- -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 30785 | 0.66 | 0.777458 |
Target: 5'- aCCGGCGUcacccucagcaggagUGcgCUCgcacagaugcgcgggGGCACGGCGAa- -3' miRNA: 3'- -GGUCGCA---------------ACaaGAG---------------CCGUGUCGCUgu -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 30717 | 0.66 | 0.769261 |
Target: 5'- uCCAGCGgcGgcUUCGGCAUgcuGCG-CAg -3' miRNA: 3'- -GGUCGCaaCaaGAGCCGUGu--CGCuGU- -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 44959 | 0.66 | 0.76823 |
Target: 5'- cCCAGCGUcucgacucguugcUG-UCUUgaguugggcgGGCACGGCGAa- -3' miRNA: 3'- -GGUCGCA-------------ACaAGAG----------CCGUGUCGCUgu -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 26889 | 0.67 | 0.746256 |
Target: 5'- gCCGGUGggUGgacucaacaccgUCUCGGCggGCAGCGcCAu -3' miRNA: 3'- -GGUCGCa-ACa-----------AGAGCCG--UGUCGCuGU- -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 45828 | 0.67 | 0.726996 |
Target: 5'- gCAGCGUcccUCUCGGCcagccagucGCGGCGcACGu -3' miRNA: 3'- gGUCGCAacaAGAGCCG---------UGUCGC-UGU- -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 37739 | 0.67 | 0.720502 |
Target: 5'- cCCAGCGUcgGggagUCUguacaacuuccgcgcUGGUACAGCGAa- -3' miRNA: 3'- -GGUCGCAa-Ca---AGA---------------GCCGUGUCGCUgu -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 32244 | 0.67 | 0.705226 |
Target: 5'- gCAGCGag--UCUUGGUACAGCGcCc -3' miRNA: 3'- gGUCGCaacaAGAGCCGUGUCGCuGu -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 34434 | 0.68 | 0.694224 |
Target: 5'- gCGGC-UUGggC-CGGCcCAGCGGCAa -3' miRNA: 3'- gGUCGcAACaaGaGCCGuGUCGCUGU- -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 23552 | 0.69 | 0.627309 |
Target: 5'- uCCAGgGcgcugCUCGGCGCGGCGuuGCGa -3' miRNA: 3'- -GGUCgCaacaaGAGCCGUGUCGC--UGU- -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 29531 | 0.69 | 0.582636 |
Target: 5'- aCCAGCG----UCUUGGCGCGggcgucguGCGGCAg -3' miRNA: 3'- -GGUCGCaacaAGAGCCGUGU--------CGCUGU- -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 23583 | 0.7 | 0.571552 |
Target: 5'- -aAGCGcg--UC-CGGCACGGCGGCGa -3' miRNA: 3'- ggUCGCaacaAGaGCCGUGUCGCUGU- -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 24555 | 0.7 | 0.560518 |
Target: 5'- gCgAGCGcUGUUaCUCGGCGaugaGGCGGCc -3' miRNA: 3'- -GgUCGCaACAA-GAGCCGUg---UCGCUGu -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 29013 | 0.72 | 0.424982 |
Target: 5'- uCCAGCGg----CUCGcGCGCGGCgGACAu -3' miRNA: 3'- -GGUCGCaacaaGAGC-CGUGUCG-CUGU- -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 25439 | 0.74 | 0.360525 |
Target: 5'- -uGGCGUUGUUCUUGGUgacguuguCGGCGAUg -3' miRNA: 3'- ggUCGCAACAAGAGCCGu-------GUCGCUGu -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 41210 | 0.77 | 0.233874 |
Target: 5'- -aGGCGUUGgacugCUCuGGCACGGUGACGu -3' miRNA: 3'- ggUCGCAACaa---GAG-CCGUGUCGCUGU- -5' |
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11433 | 5' | -53.5 | NC_003085.1 | + | 37095 | 1.1 | 0.001142 |
Target: 5'- uCCAGCGUUGUUCUCGGCACAGCGACAc -3' miRNA: 3'- -GGUCGCAACAAGAGCCGUGUCGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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