miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11434 3' -59.6 NC_003085.1 + 45763 0.66 0.438189
Target:  5'- -cCACCAGCaccGGaCGcGGCGUCAggacucgCCGCg -3'
miRNA:   3'- gcGUGGUCG---CC-GCaCCGCAGUa------GGUG- -5'
11434 3' -59.6 NC_003085.1 + 34082 0.69 0.309939
Target:  5'- cCGcCGCCgaugaGGCGGguucgGUGGCGUCAgggCCACc -3'
miRNA:   3'- -GC-GUGG-----UCGCCg----CACCGCAGUa--GGUG- -5'
11434 3' -59.6 NC_003085.1 + 8516 0.68 0.333144
Target:  5'- gCGCACCAGCgGGCGcaGGCGaaggCGgugacgCCAUg -3'
miRNA:   3'- -GCGUGGUCG-CCGCa-CCGCa---GUa-----GGUG- -5'
11434 3' -59.6 NC_003085.1 + 47884 0.68 0.348487
Target:  5'- aGCGCguGCGGCcugcucucugccaGUGucaGCGUCGUCuCGCa -3'
miRNA:   3'- gCGUGguCGCCG-------------CAC---CGCAGUAG-GUG- -5'
11434 3' -59.6 NC_003085.1 + 42833 0.67 0.374587
Target:  5'- gGCGCUGGCGGCGc-GCGUCuucgucuccCCACc -3'
miRNA:   3'- gCGUGGUCGCCGCacCGCAGua-------GGUG- -5'
11434 3' -59.6 NC_003085.1 + 2014 0.67 0.374587
Target:  5'- aGCGgauGCGGCGUGGCG-CGauguguUCCACc -3'
miRNA:   3'- gCGUgguCGCCGCACCGCaGU------AGGUG- -5'
11434 3' -59.6 NC_003085.1 + 34504 0.67 0.392114
Target:  5'- gGCACCAcggacgcguGCGGCGacaGCGUCAgcaaCACa -3'
miRNA:   3'- gCGUGGU---------CGCCGCac-CGCAGUag--GUG- -5'
11434 3' -59.6 NC_003085.1 + 6764 0.67 0.401075
Target:  5'- cCGCGCC-GUGGCGgacGGCGagAgcccuUCCGCu -3'
miRNA:   3'- -GCGUGGuCGCCGCa--CCGCagU-----AGGUG- -5'
11434 3' -59.6 NC_003085.1 + 34828 0.66 0.428726
Target:  5'- gGCGCUgaccgAGC-GCGUcaagaaGGCGUCAUCCGa -3'
miRNA:   3'- gCGUGG-----UCGcCGCA------CCGCAGUAGGUg -5'
11434 3' -59.6 NC_003085.1 + 6079 0.69 0.27404
Target:  5'- uGCACCAGCGGCcccagGGaGUCcUCCGu -3'
miRNA:   3'- gCGUGGUCGCCGca---CCgCAGuAGGUg -5'
11434 3' -59.6 NC_003085.1 + 30003 0.7 0.260641
Target:  5'- aGCgGCCcugGGCGGCcuUGGCGacgUCGUCCGCg -3'
miRNA:   3'- gCG-UGG---UCGCCGc-ACCGC---AGUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 41001 0.7 0.253502
Target:  5'- gGC-CCAGCGGCGUcgucaucgccgugGGCGUCGcUgGCg -3'
miRNA:   3'- gCGuGGUCGCCGCA-------------CCGCAGUaGgUG- -5'
11434 3' -59.6 NC_003085.1 + 48691 0.79 0.054949
Target:  5'- gCGCACCGuugcGCGGCGUGGCGgacUCGcCCACc -3'
miRNA:   3'- -GCGUGGU----CGCCGCACCGC---AGUaGGUG- -5'
11434 3' -59.6 NC_003085.1 + 25238 0.74 0.130092
Target:  5'- gGCGCCGcccuggugcgcuccGCGGCG-GGCGUCGUCguCg -3'
miRNA:   3'- gCGUGGU--------------CGCCGCaCCGCAGUAGguG- -5'
11434 3' -59.6 NC_003085.1 + 37208 0.72 0.17193
Target:  5'- gGCGCCAGCGGCcuucaauucUGGCGgcccagCcgCCGCg -3'
miRNA:   3'- gCGUGGUCGCCGc--------ACCGCa-----GuaGGUG- -5'
11434 3' -59.6 NC_003085.1 + 48399 0.71 0.199946
Target:  5'- aGCGCCgcauugucugccucGGCGGCGcUGGCuUCcUCCGCa -3'
miRNA:   3'- gCGUGG--------------UCGCCGC-ACCGcAGuAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 21358 0.71 0.206869
Target:  5'- gCGCGCCAuCcGCGUGGUGggCGUCUACg -3'
miRNA:   3'- -GCGUGGUcGcCGCACCGCa-GUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 28506 0.71 0.223062
Target:  5'- gCGCGCCAuucagGCGGUGgacGCGUCAgggcgaaUCCGCg -3'
miRNA:   3'- -GCGUGGU-----CGCCGCac-CGCAGU-------AGGUG- -5'
11434 3' -59.6 NC_003085.1 + 28606 0.71 0.223639
Target:  5'- -aCGCCGGUGGUGUGGCGcUCG-CUGCu -3'
miRNA:   3'- gcGUGGUCGCCGCACCGC-AGUaGGUG- -5'
11434 3' -59.6 NC_003085.1 + 14916 0.7 0.235451
Target:  5'- gCGCACCGGCcgccagcGCGUGGCG-C-UCCAa -3'
miRNA:   3'- -GCGUGGUCGc------CGCACCGCaGuAGGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.