miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11434 5' -56.4 NC_003085.1 + 42842 0.66 0.621104
Target:  5'- gGCGCGCGuCUUCGUCuCCcCAC-CUCc- -3'
miRNA:   3'- -CGCGUGU-GAAGCAG-GGcGUGcGAGaa -5'
11434 5' -56.4 NC_003085.1 + 35881 0.66 0.608916
Target:  5'- gGCGCGCcuccgguGCccaCGUCCaCGCGCGC-CUUg -3'
miRNA:   3'- -CGCGUG-------UGaa-GCAGG-GCGUGCGaGAA- -5'
11434 5' -56.4 NC_003085.1 + 15138 0.66 0.608916
Target:  5'- gGUGCugGCUgaagcuggacgccUCGgugcccugCCCGCgACGCUCg- -3'
miRNA:   3'- -CGCGugUGA-------------AGCa-------GGGCG-UGCGAGaa -5'
11434 5' -56.4 NC_003085.1 + 43930 0.66 0.598961
Target:  5'- uGCGCGCACUUCGcgcaCCagugcgaGCACGUg--- -3'
miRNA:   3'- -CGCGUGUGAAGCa---GGg------CGUGCGagaa -5'
11434 5' -56.4 NC_003085.1 + 45264 0.66 0.587928
Target:  5'- cGCGCGucaGCggCGUCCUGCGucUGCUCc- -3'
miRNA:   3'- -CGCGUg--UGaaGCAGGGCGU--GCGAGaa -5'
11434 5' -56.4 NC_003085.1 + 20974 0.66 0.576933
Target:  5'- gGCGCGCGCguugcgCGUCa-GCACGCa--- -3'
miRNA:   3'- -CGCGUGUGaa----GCAGggCGUGCGagaa -5'
11434 5' -56.4 NC_003085.1 + 22745 0.66 0.575835
Target:  5'- gGCGC-CGCgcCGUCaCCGCccugcgcGCGCUCg- -3'
miRNA:   3'- -CGCGuGUGaaGCAG-GGCG-------UGCGAGaa -5'
11434 5' -56.4 NC_003085.1 + 21819 0.67 0.565983
Target:  5'- gGCG-AUGCggCGUCCCGCugGCg--- -3'
miRNA:   3'- -CGCgUGUGaaGCAGGGCGugCGagaa -5'
11434 5' -56.4 NC_003085.1 + 38833 0.67 0.565983
Target:  5'- aGgGCGCACUgccgcgUCGUCCCacugcgacgGCGCGCg--- -3'
miRNA:   3'- -CgCGUGUGA------AGCAGGG---------CGUGCGagaa -5'
11434 5' -56.4 NC_003085.1 + 35260 0.67 0.555089
Target:  5'- cGCGCGgGCUugUCGcagCCCGgACGCUg-- -3'
miRNA:   3'- -CGCGUgUGA--AGCa--GGGCgUGCGAgaa -5'
11434 5' -56.4 NC_003085.1 + 2968 0.67 0.555089
Target:  5'- aGCGCGCGguggUUUCGUCgaGCGCGCg--- -3'
miRNA:   3'- -CGCGUGU----GAAGCAGggCGUGCGagaa -5'
11434 5' -56.4 NC_003085.1 + 17683 0.67 0.544256
Target:  5'- cGgGC-CGCUUCGcccaaCCGCACGCUaCUUu -3'
miRNA:   3'- -CgCGuGUGAAGCag---GGCGUGCGA-GAA- -5'
11434 5' -56.4 NC_003085.1 + 1920 0.68 0.501691
Target:  5'- cGCGCuGCGCaUCG-CUCGCGgGCUCg- -3'
miRNA:   3'- -CGCG-UGUGaAGCaGGGCGUgCGAGaa -5'
11434 5' -56.4 NC_003085.1 + 31756 0.69 0.431069
Target:  5'- gGCGCAC-CUUCGUCCCGgaaaguaGCGUg--- -3'
miRNA:   3'- -CGCGUGuGAAGCAGGGCg------UGCGagaa -5'
11434 5' -56.4 NC_003085.1 + 27010 0.69 0.431069
Target:  5'- gGUGCACGggcCUUgGUgugCCUGCGCGCUCg- -3'
miRNA:   3'- -CGCGUGU---GAAgCA---GGGCGUGCGAGaa -5'
11434 5' -56.4 NC_003085.1 + 35541 0.7 0.384342
Target:  5'- gGCGCGCGCccCGUCCgaaaCGCGCGCa--- -3'
miRNA:   3'- -CGCGUGUGaaGCAGG----GCGUGCGagaa -5'
11434 5' -56.4 NC_003085.1 + 20268 0.7 0.384342
Target:  5'- cGCGUGCGCUccgCGUCCuCGCgGCGCUg-- -3'
miRNA:   3'- -CGCGUGUGAa--GCAGG-GCG-UGCGAgaa -5'
11434 5' -56.4 NC_003085.1 + 40785 0.7 0.366614
Target:  5'- uGCGCGCACg-CGUCgCGCGCGgaCg- -3'
miRNA:   3'- -CGCGUGUGaaGCAGgGCGUGCgaGaa -5'
11434 5' -56.4 NC_003085.1 + 48950 0.7 0.357964
Target:  5'- aGCGCGCAUccggUCcggCCCGCGCGC-CUUc -3'
miRNA:   3'- -CGCGUGUGa---AGca-GGGCGUGCGaGAA- -5'
11434 5' -56.4 NC_003085.1 + 44981 0.73 0.245644
Target:  5'- -aGCGCGCUUCGUCaCCGUGCcCUCg- -3'
miRNA:   3'- cgCGUGUGAAGCAG-GGCGUGcGAGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.