miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11436 3' -53.9 NC_003085.1 + 10427 0.66 0.776144
Target:  5'- ---aCGCGcAGCGCUCGcccACGcauGCCg -3'
miRNA:   3'- uaagGCGCuUCGCGAGC---UGCuauCGG- -5'
11436 3' -53.9 NC_003085.1 + 22407 0.66 0.776144
Target:  5'- --gCCGCGccagacuuGGCGCUacCGGCGaAUGGCa -3'
miRNA:   3'- uaaGGCGCu-------UCGCGA--GCUGC-UAUCGg -5'
11436 3' -53.9 NC_003085.1 + 48614 0.66 0.776143
Target:  5'- ----aGCGAuGCGCUUGGCGccGUAuGCCu -3'
miRNA:   3'- uaaggCGCUuCGCGAGCUGC--UAU-CGG- -5'
11436 3' -53.9 NC_003085.1 + 5171 0.66 0.765848
Target:  5'- --gCgGCGAuuGCuGCUCGACGGgaggaacaAGCCa -3'
miRNA:   3'- uaaGgCGCUu-CG-CGAGCUGCUa-------UCGG- -5'
11436 3' -53.9 NC_003085.1 + 35948 0.66 0.765848
Target:  5'- --cUUGCGGAGCuuCUCGACGuucGCCg -3'
miRNA:   3'- uaaGGCGCUUCGc-GAGCUGCuauCGG- -5'
11436 3' -53.9 NC_003085.1 + 28949 0.66 0.765848
Target:  5'- -aUgCGCGGAgucGCGCUCGucGCGGUA-CCg -3'
miRNA:   3'- uaAgGCGCUU---CGCGAGC--UGCUAUcGG- -5'
11436 3' -53.9 NC_003085.1 + 43655 0.66 0.765848
Target:  5'- -cUCCcCGAuGCGCaccgcucCGACGAaGGCCa -3'
miRNA:   3'- uaAGGcGCUuCGCGa------GCUGCUaUCGG- -5'
11436 3' -53.9 NC_003085.1 + 47594 0.66 0.765848
Target:  5'- --gCCGauGAGCGCaaGACGG-AGCCg -3'
miRNA:   3'- uaaGGCgcUUCGCGagCUGCUaUCGG- -5'
11436 3' -53.9 NC_003085.1 + 44131 0.66 0.755411
Target:  5'- -cUCCGCGGccacGCGCUUcuCGGUcGCCu -3'
miRNA:   3'- uaAGGCGCUu---CGCGAGcuGCUAuCGG- -5'
11436 3' -53.9 NC_003085.1 + 42061 0.66 0.744842
Target:  5'- -gUCCGCGcgGAGCGgggugaaGACGAU-GCCg -3'
miRNA:   3'- uaAGGCGC--UUCGCgag----CUGCUAuCGG- -5'
11436 3' -53.9 NC_003085.1 + 27722 0.66 0.744842
Target:  5'- ---aCGuCGuAGUGCUCGGCGAUGaccuccGCCu -3'
miRNA:   3'- uaagGC-GCuUCGCGAGCUGCUAU------CGG- -5'
11436 3' -53.9 NC_003085.1 + 26119 0.66 0.744842
Target:  5'- -cUCgGCGGccggcGGCGCUUGGCc--GGCCa -3'
miRNA:   3'- uaAGgCGCU-----UCGCGAGCUGcuaUCGG- -5'
11436 3' -53.9 NC_003085.1 + 43810 0.66 0.744842
Target:  5'- -cUCCGCG--GCGCUCG-CGcaAGUCa -3'
miRNA:   3'- uaAGGCGCuuCGCGAGCuGCuaUCGG- -5'
11436 3' -53.9 NC_003085.1 + 6419 0.66 0.744842
Target:  5'- cGUUCCccaGCGGGcCGCUCGACac-GGCCc -3'
miRNA:   3'- -UAAGG---CGCUUcGCGAGCUGcuaUCGG- -5'
11436 3' -53.9 NC_003085.1 + 48630 0.66 0.734155
Target:  5'- ---aCGUGAGagacGCGCUCGACGAccuGCg -3'
miRNA:   3'- uaagGCGCUU----CGCGAGCUGCUau-CGg -5'
11436 3' -53.9 NC_003085.1 + 8109 0.66 0.734154
Target:  5'- --gCCGCGAaguugGGCGCUgaUGACGugGUGGaCCu -3'
miRNA:   3'- uaaGGCGCU-----UCGCGA--GCUGC--UAUC-GG- -5'
11436 3' -53.9 NC_003085.1 + 44510 0.66 0.720104
Target:  5'- cUUCUGCGcGGUggugcccagcacccGCcggacgacucuuUCGACGAUGGCCu -3'
miRNA:   3'- uAAGGCGCuUCG--------------CG------------AGCUGCUAUCGG- -5'
11436 3' -53.9 NC_003085.1 + 47960 0.67 0.713566
Target:  5'- --gCCGUGAGGCGCaccggccgaggcuggCGACGGUgacgGGCg -3'
miRNA:   3'- uaaGGCGCUUCGCGa--------------GCUGCUA----UCGg -5'
11436 3' -53.9 NC_003085.1 + 37057 0.67 0.712473
Target:  5'- --aCCGCGcuGGCGC-CGACGAcguGCg -3'
miRNA:   3'- uaaGGCGCu-UCGCGaGCUGCUau-CGg -5'
11436 3' -53.9 NC_003085.1 + 39776 0.67 0.712473
Target:  5'- -gUCUGCaGGgacgccagccGGUGCUCGACGuuggcGGCCg -3'
miRNA:   3'- uaAGGCG-CU----------UCGCGAGCUGCua---UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.