miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11436 5' -57.2 NC_003085.1 + 35042 1.11 0.000449
Target:  5'- gCCAGCCCUCGCGGAGCAUCUCCAAGGc -3'
miRNA:   3'- -GGUCGGGAGCGCCUCGUAGAGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 13464 0.81 0.067732
Target:  5'- gCCaAGCUgUCGCGGAGCGUUUCCuGGGc -3'
miRNA:   3'- -GG-UCGGgAGCGCCUCGUAGAGGuUCC- -5'
11436 5' -57.2 NC_003085.1 + 44155 0.76 0.152278
Target:  5'- gCCAcGCgCUCGCGGAGgGaggcgacuucggUCUCCAGGGc -3'
miRNA:   3'- -GGU-CGgGAGCGCCUCgU------------AGAGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 26140 0.74 0.209822
Target:  5'- gCCGGCCagaGCGGcgucaAGCAUCUCCAGcGGc -3'
miRNA:   3'- -GGUCGGgagCGCC-----UCGUAGAGGUU-CC- -5'
11436 5' -57.2 NC_003085.1 + 42867 0.72 0.292322
Target:  5'- cCCGGCCCggcCG-GGGGCGUgUCgAGGGu -3'
miRNA:   3'- -GGUCGGGa--GCgCCUCGUAgAGgUUCC- -5'
11436 5' -57.2 NC_003085.1 + 45843 0.71 0.30706
Target:  5'- gCCAGCCagUCGCGGcGCAcgUCCAGGcGg -3'
miRNA:   3'- -GGUCGGg-AGCGCCuCGUagAGGUUC-C- -5'
11436 5' -57.2 NC_003085.1 + 47818 0.71 0.339029
Target:  5'- gCCAGCCCagacgUUGCGGuugugccagucguccGCGUCaUCCGGGGu -3'
miRNA:   3'- -GGUCGGG-----AGCGCCu--------------CGUAG-AGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 46432 0.7 0.354643
Target:  5'- aCAGCCUUCGCGugcaccgucuGGGCGUCgUCCGugcgcccagcGGGg -3'
miRNA:   3'- gGUCGGGAGCGC----------CUCGUAG-AGGU----------UCC- -5'
11436 5' -57.2 NC_003085.1 + 19434 0.7 0.354643
Target:  5'- gCUGGCCCUggaagcCGCGGAcGaCGUCgCCAAGGc -3'
miRNA:   3'- -GGUCGGGA------GCGCCU-C-GUAGaGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 29416 0.7 0.380313
Target:  5'- gCCAGCCCaUgGCGGAGgcuCAggcgCUgCAAGGc -3'
miRNA:   3'- -GGUCGGG-AgCGCCUC---GUa---GAgGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 40664 0.7 0.380313
Target:  5'- gCCGcGCaaCCUCGCGGAGCcgCcggCgCAGGGg -3'
miRNA:   3'- -GGU-CG--GGAGCGCCUCGuaGa--G-GUUCC- -5'
11436 5' -57.2 NC_003085.1 + 48156 0.7 0.389141
Target:  5'- gCCAGCCUUCGCGGccacGCGggagaaCUCCGGc- -3'
miRNA:   3'- -GGUCGGGAGCGCCu---CGUa-----GAGGUUcc -5'
11436 5' -57.2 NC_003085.1 + 24218 0.7 0.389141
Target:  5'- --cGCCCgcCGCGGAGCG-CaCCAGGGc -3'
miRNA:   3'- gguCGGGa-GCGCCUCGUaGaGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 49139 0.69 0.398102
Target:  5'- --cGUCCUCGUccucuccGAGCAUCUCCAugAGGu -3'
miRNA:   3'- gguCGGGAGCGc------CUCGUAGAGGU--UCC- -5'
11436 5' -57.2 NC_003085.1 + 46235 0.69 0.407195
Target:  5'- gCCGGCCCagguagCGcCGGcaucgccuugcGGCAUCgggCCAGGGc -3'
miRNA:   3'- -GGUCGGGa-----GC-GCC-----------UCGUAGa--GGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 21018 0.69 0.416417
Target:  5'- uCCAcGCCCUgGCGGcGGUAUgUCCAGc- -3'
miRNA:   3'- -GGU-CGGGAgCGCC-UCGUAgAGGUUcc -5'
11436 5' -57.2 NC_003085.1 + 11639 0.69 0.425765
Target:  5'- aCCAGCgCgCGCGGAggGCAUUgcgccggguggCCGAGGa -3'
miRNA:   3'- -GGUCGgGaGCGCCU--CGUAGa----------GGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 23479 0.69 0.435237
Target:  5'- uCgAGCUCcgCGCGGAGUugCUCgGAGGg -3'
miRNA:   3'- -GgUCGGGa-GCGCCUCGuaGAGgUUCC- -5'
11436 5' -57.2 NC_003085.1 + 35942 0.69 0.43906
Target:  5'- gUAGCgCUUGCGGAGCuucucgacGuucgccgcugccacgUCUCCGAGGu -3'
miRNA:   3'- gGUCGgGAGCGCCUCG--------U---------------AGAGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 45297 0.68 0.45454
Target:  5'- uCCGGuCCUUCGuCGGAgGCGUgguUUUCAAGGg -3'
miRNA:   3'- -GGUC-GGGAGC-GCCU-CGUA---GAGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.