Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 25753 | 0.66 | 0.589319 |
Target: 5'- gCCAGUacgaggcauuCCUCGCGG-GCAagUCCGAc- -3' miRNA: 3'- -GGUCG----------GGAGCGCCuCGUagAGGUUcc -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 25925 | 0.68 | 0.483327 |
Target: 5'- gCguGCCCUCGUGGAgaaggcgaagacuGCGUgaagCgugCCGAGGg -3' miRNA: 3'- -GguCGGGAGCGCCU-------------CGUA----Ga--GGUUCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 26140 | 0.74 | 0.209822 |
Target: 5'- gCCGGCCagaGCGGcgucaAGCAUCUCCAGcGGc -3' miRNA: 3'- -GGUCGGgagCGCC-----UCGUAGAGGUU-CC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 27522 | 0.66 | 0.57854 |
Target: 5'- gCCGGCauggaugacucCCUCGUGGc-CAUCUCCGGcGGc -3' miRNA: 3'- -GGUCG-----------GGAGCGCCucGUAGAGGUU-CC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 27910 | 0.68 | 0.464364 |
Target: 5'- -uGGCCCUCGCGGGccgcGCGUggUUCCGGuaccGGa -3' miRNA: 3'- ggUCGGGAGCGCCU----CGUA--GAGGUU----CC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 29059 | 0.66 | 0.57854 |
Target: 5'- cCCAGCCCU---GGGGCGUgUCCGcgaagucuguGGGc -3' miRNA: 3'- -GGUCGGGAgcgCCUCGUAgAGGU----------UCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 29288 | 0.67 | 0.525445 |
Target: 5'- aCCGGCUCUCG-GGAGUacGUCUgCAAc- -3' miRNA: 3'- -GGUCGGGAGCgCCUCG--UAGAgGUUcc -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 29416 | 0.7 | 0.380313 |
Target: 5'- gCCAGCCCaUgGCGGAGgcuCAggcgCUgCAAGGc -3' miRNA: 3'- -GGUCGGG-AgCGCCUC---GUa---GAgGUUCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 29967 | 0.67 | 0.546494 |
Target: 5'- gCAGCCCUC-CGGcaAGCAgucaUCCAccggauGGGg -3' miRNA: 3'- gGUCGGGAGcGCC--UCGUag--AGGU------UCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 30083 | 0.68 | 0.474297 |
Target: 5'- aCCGGCCCaCGCGGcugcacAGCAcg-UCGAGGa -3' miRNA: 3'- -GGUCGGGaGCGCC------UCGUagaGGUUCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 30330 | 0.66 | 0.610973 |
Target: 5'- gCgGGCCCUgGCGGAcGC-UgUCgCGGGGc -3' miRNA: 3'- -GgUCGGGAgCGCCU-CGuAgAG-GUUCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 33263 | 0.68 | 0.474297 |
Target: 5'- uUCAGUCCUCGCGcgcGAGCGUaccugUCaGAGGg -3' miRNA: 3'- -GGUCGGGAGCGC---CUCGUAg----AGgUUCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 35042 | 1.11 | 0.000449 |
Target: 5'- gCCAGCCCUCGCGGAGCAUCUCCAAGGc -3' miRNA: 3'- -GGUCGGGAGCGCCUCGUAGAGGUUCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 35942 | 0.69 | 0.43906 |
Target: 5'- gUAGCgCUUGCGGAGCuucucgacGuucgccgcugccacgUCUCCGAGGu -3' miRNA: 3'- gGUCGgGAGCGCCUCG--------U---------------AGAGGUUCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 36908 | 0.68 | 0.50471 |
Target: 5'- cCCAGCCCggccagcggCGCGGguGGCAUC-CCu--- -3' miRNA: 3'- -GGUCGGGa--------GCGCC--UCGUAGaGGuucc -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 38383 | 0.66 | 0.610973 |
Target: 5'- gCAGaCuCCUgGCGGuGCAgg-CCGAGGu -3' miRNA: 3'- gGUC-G-GGAgCGCCuCGUagaGGUUCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 38761 | 0.68 | 0.474297 |
Target: 5'- gCCAGUgCCUCGCGG-GCcgCgCgCAGGGc -3' miRNA: 3'- -GGUCG-GGAGCGCCuCGuaGaG-GUUCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 40664 | 0.7 | 0.380313 |
Target: 5'- gCCGcGCaaCCUCGCGGAGCcgCcggCgCAGGGg -3' miRNA: 3'- -GGU-CG--GGAGCGCCUCGuaGa--G-GUUCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 42095 | 0.66 | 0.567805 |
Target: 5'- gUCGG-CCUCGUacuGGAGCGgcgC-CCAGGGg -3' miRNA: 3'- -GGUCgGGAGCG---CCUCGUa--GaGGUUCC- -5' |
|||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 42867 | 0.72 | 0.292322 |
Target: 5'- cCCGGCCCggcCG-GGGGCGUgUCgAGGGu -3' miRNA: 3'- -GGUCGGGa--GCgCCUCGUAgAGgUUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home