miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11437 3' -60.1 NC_003085.1 + 9188 0.66 0.409175
Target:  5'- -gGgUCgGCGCgGGUACUCCUGCGCCc- -3'
miRNA:   3'- agUgAG-UGUG-CCGUGGGGACGCGGcg -5'
11437 3' -60.1 NC_003085.1 + 47939 0.66 0.409175
Target:  5'- gUCGCUggUACuCGGCugccucuuGCCCgaGCGCCGg -3'
miRNA:   3'- -AGUGA--GUGuGCCG--------UGGGgaCGCGGCg -5'
11437 3' -60.1 NC_003085.1 + 1201 0.67 0.40016
Target:  5'- cCAUUgACcaACcuCACCCCgGCGCCGCg -3'
miRNA:   3'- aGUGAgUG--UGccGUGGGGaCGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 38870 0.67 0.40016
Target:  5'- aUguCUCAgcCugGGCugCCUcGUGCUGCg -3'
miRNA:   3'- -AguGAGU--GugCCGugGGGaCGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 9869 0.67 0.398372
Target:  5'- gCGCUC-CGCGacGCGCUCCagcuugccagugGCGCCGUa -3'
miRNA:   3'- aGUGAGuGUGC--CGUGGGGa-----------CGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 45723 0.67 0.391273
Target:  5'- cCGCUCACcaaguccugcGCgGGUGCUgCCUGCGUCGUc -3'
miRNA:   3'- aGUGAGUG----------UG-CCGUGG-GGACGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 30346 0.67 0.391273
Target:  5'- gCugUCGCGgGGCGCa-CUGCGgCGUc -3'
miRNA:   3'- aGugAGUGUgCCGUGggGACGCgGCG- -5'
11437 3' -60.1 NC_003085.1 + 35615 0.67 0.391273
Target:  5'- gUUGCcgCACAucCGGCACuuCCCUGgGCgGCg -3'
miRNA:   3'- -AGUGa-GUGU--GCCGUG--GGGACgCGgCG- -5'
11437 3' -60.1 NC_003085.1 + 22736 0.67 0.390392
Target:  5'- -gACagCAC-CGGCGCcgcgccgucaccgCCCUGCGCgCGCu -3'
miRNA:   3'- agUGa-GUGuGCCGUG-------------GGGACGCG-GCG- -5'
11437 3' -60.1 NC_003085.1 + 22624 0.67 0.382516
Target:  5'- aCGCagggaaGCAgGGCACCCaggaGCGCCGg -3'
miRNA:   3'- aGUGag----UGUgCCGUGGGga--CGCGGCg -5'
11437 3' -60.1 NC_003085.1 + 35178 0.67 0.382516
Target:  5'- -gGCU-GCGCGGCGCUugacggcagcagCCUG-GCCGCa -3'
miRNA:   3'- agUGAgUGUGCCGUGG------------GGACgCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 39307 0.67 0.382516
Target:  5'- cCGgUCcuCGCGGUACUCCc-CGCCGCg -3'
miRNA:   3'- aGUgAGu-GUGCCGUGGGGacGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 27901 0.67 0.382516
Target:  5'- -aACUCGuCAUGGC-CCUCgcGgGCCGCg -3'
miRNA:   3'- agUGAGU-GUGCCGuGGGGa-CgCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 24873 0.67 0.37389
Target:  5'- aC-CUCACcugcaGCGGCGCCCaguuccaGgGCCGCc -3'
miRNA:   3'- aGuGAGUG-----UGCCGUGGGga-----CgCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 14120 0.67 0.365397
Target:  5'- cCACUgC-CACGGCAUCaCC-GUGCUGCc -3'
miRNA:   3'- aGUGA-GuGUGCCGUGG-GGaCGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 3889 0.67 0.365397
Target:  5'- gUCugUCGCgguGGCACUgCUcGUGCUGCg -3'
miRNA:   3'- -AGugAGUGug-CCGUGGgGA-CGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 47493 0.67 0.365397
Target:  5'- cUCAUgCACGCGGCGgaaCCUGUcgguggcgaaGCCGCu -3'
miRNA:   3'- -AGUGaGUGUGCCGUgg-GGACG----------CGGCG- -5'
11437 3' -60.1 NC_003085.1 + 16225 0.67 0.363715
Target:  5'- cUC-CUCAuCGCGGCuggcgucgucauCCUcgugCUGCGCCGCc -3'
miRNA:   3'- -AGuGAGU-GUGCCGu-----------GGG----GACGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 11351 0.67 0.360366
Target:  5'- cUCACggCAcCuccgagacgauggugGCGGCGCCggacaCCUGCGCUGCc -3'
miRNA:   3'- -AGUGa-GU-G---------------UGCCGUGG-----GGACGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 18293 0.67 0.357039
Target:  5'- cCAC-CGgGCGGUgcacGCCCCgGCGCUGg -3'
miRNA:   3'- aGUGaGUgUGCCG----UGGGGaCGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.