miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11437 5' -53.5 NC_003085.1 + 44023 0.66 0.808925
Target:  5'- uCGGCGGUGGagagacGGGAagcgguCCGCUCa -3'
miRNA:   3'- -GCCGCUACUaagu--CCCUau----GGCGAGc -5'
11437 5' -53.5 NC_003085.1 + 3945 0.66 0.805073
Target:  5'- gCGGCGAUGuugucgcggccCGGGGAUggagccagacgGCCGCgcuugCGa -3'
miRNA:   3'- -GCCGCUACuaa--------GUCCCUA-----------UGGCGa----GC- -5'
11437 5' -53.5 NC_003085.1 + 3665 0.66 0.799241
Target:  5'- uGGCGAgguugGAggCAGGGAcGgCGCggCGa -3'
miRNA:   3'- gCCGCUa----CUaaGUCCCUaUgGCGa-GC- -5'
11437 5' -53.5 NC_003085.1 + 37994 0.66 0.789378
Target:  5'- gCGGCGGUGGU---GGGAcgcucacACCGCgUCGg -3'
miRNA:   3'- -GCCGCUACUAaguCCCUa------UGGCG-AGC- -5'
11437 5' -53.5 NC_003085.1 + 12018 0.66 0.789378
Target:  5'- gCGGUGgcGGgcgCGGGGuUGgCGCUCGc -3'
miRNA:   3'- -GCCGCuaCUaa-GUCCCuAUgGCGAGC- -5'
11437 5' -53.5 NC_003085.1 + 35788 0.67 0.748357
Target:  5'- aCGGcCGGUGuccuugUCcauGGGGUugCGCUCc -3'
miRNA:   3'- -GCC-GCUACua----AGu--CCCUAugGCGAGc -5'
11437 5' -53.5 NC_003085.1 + 24569 0.67 0.716278
Target:  5'- uCGGCGAUGAggCGGcccuggaacuGGGcGCCGCUg- -3'
miRNA:   3'- -GCCGCUACUaaGUC----------CCUaUGGCGAgc -5'
11437 5' -53.5 NC_003085.1 + 8461 0.67 0.716278
Target:  5'- aCGGCGAUGAcgacgccgCuGGGccagcccuUGCCGCUUGc -3'
miRNA:   3'- -GCCGCUACUaa------GuCCCu-------AUGGCGAGC- -5'
11437 5' -53.5 NC_003085.1 + 42751 0.67 0.716278
Target:  5'- uCGGCGGcaugGGUgcggugCAGGGcgGCCGCa-- -3'
miRNA:   3'- -GCCGCUa---CUAa-----GUCCCuaUGGCGagc -5'
11437 5' -53.5 NC_003085.1 + 883 0.68 0.684533
Target:  5'- cCGGCGGUGGcgUCcgAGGGGcaucccgugccaacCCGCUCGg -3'
miRNA:   3'- -GCCGCUACUa-AG--UCCCUau------------GGCGAGC- -5'
11437 5' -53.5 NC_003085.1 + 28517 0.68 0.672364
Target:  5'- aGGCGGUGGacgcgUCAGGGcgaauCCGCggCGu -3'
miRNA:   3'- gCCGCUACUa----AGUCCCuau--GGCGa-GC- -5'
11437 5' -53.5 NC_003085.1 + 18345 0.68 0.661259
Target:  5'- uCGGCGcgcugcUCGGGGuugaGCCGCUCGc -3'
miRNA:   3'- -GCCGCuacua-AGUCCCua--UGGCGAGC- -5'
11437 5' -53.5 NC_003085.1 + 17530 0.69 0.638977
Target:  5'- cCGGUGAUGAaggCAccGGGcUGCUGCUCc -3'
miRNA:   3'- -GCCGCUACUaa-GU--CCCuAUGGCGAGc -5'
11437 5' -53.5 NC_003085.1 + 24247 0.7 0.550374
Target:  5'- cCGGUGAUGAgguacCAGccGUACUGCUCGg -3'
miRNA:   3'- -GCCGCUACUaa---GUCccUAUGGCGAGC- -5'
11437 5' -53.5 NC_003085.1 + 38062 0.71 0.496856
Target:  5'- gCGGCGGUGcgUCAgccGGcGGUAgCGCUCc -3'
miRNA:   3'- -GCCGCUACuaAGU---CC-CUAUgGCGAGc -5'
11437 5' -53.5 NC_003085.1 + 34015 1.08 0.001594
Target:  5'- gCGGCGAUGAUUCAGGGAUACCGCUCGc -3'
miRNA:   3'- -GCCGCUACUAAGUCCCUAUGGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.