Results 41 - 60 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11438 | 5' | -54 | NC_003085.1 | + | 18077 | 0.67 | 0.710625 |
Target: 5'- --cGUGCGGCuGGCcucuuUGcgGCCGggGUc -3' miRNA: 3'- guaCGCGCCG-CUGu----ACaaCGGCuuCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 47494 | 0.67 | 0.688576 |
Target: 5'- uCAUGCacGCGGCGGaaccUGUcggUGgCGAAGCc -3' miRNA: 3'- -GUACG--CGCCGCUgu--ACA---ACgGCUUCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 14930 | 0.67 | 0.688576 |
Target: 5'- --gGCGCucGCGGCcgcuGUGUUGCUGAcGCu -3' miRNA: 3'- guaCGCGc-CGCUG----UACAACGGCUuCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 12237 | 0.67 | 0.6663 |
Target: 5'- --aGCGCGGCGGCugg--GCCGccagaauugaAGGCc -3' miRNA: 3'- guaCGCGCCGCUGuacaaCGGC----------UUCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 28050 | 0.67 | 0.655107 |
Target: 5'- -cUGCGCGGCcucgGACAgcagGcgGCCGAuGGUg -3' miRNA: 3'- guACGCGCCG----CUGUa---CaaCGGCU-UCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 20090 | 0.67 | 0.710625 |
Target: 5'- --cGCGCuGUGACGUGccgcaggUGgCGggGCu -3' miRNA: 3'- guaCGCGcCGCUGUACa------ACgGCuuCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 19064 | 0.67 | 0.655107 |
Target: 5'- --cGCGCGGCGgaGCA-GgcGCCG-GGCc -3' miRNA: 3'- guaCGCGCCGC--UGUaCaaCGGCuUCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 47354 | 0.67 | 0.655107 |
Target: 5'- cCAUGCGU-GCGACAaGcUGUCGAGGa -3' miRNA: 3'- -GUACGCGcCGCUGUaCaACGGCUUCg -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 27615 | 0.67 | 0.6663 |
Target: 5'- -cUGCGCGGUG-UGUGgaGCCuggGggGCu -3' miRNA: 3'- guACGCGCCGCuGUACaaCGG---CuuCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 20649 | 0.67 | 0.677461 |
Target: 5'- gAUGaCGUGGCucGCGUcgcgucggaGUUGCUGGAGCg -3' miRNA: 3'- gUAC-GCGCCGc-UGUA---------CAACGGCUUCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 24821 | 0.67 | 0.699635 |
Target: 5'- --cGCGCGGCuuuCAaccagGacGCCGAGGCg -3' miRNA: 3'- guaCGCGCCGcu-GUa----CaaCGGCUUCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 28315 | 0.67 | 0.699635 |
Target: 5'- gGUGCGCGGUGGgAcgGgcGUgGGAGUg -3' miRNA: 3'- gUACGCGCCGCUgUa-CaaCGgCUUCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 2656 | 0.67 | 0.655107 |
Target: 5'- cCGUG-GUGGCGuCAcGUUGuaCCGggGCa -3' miRNA: 3'- -GUACgCGCCGCuGUaCAAC--GGCuuCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 21558 | 0.66 | 0.742001 |
Target: 5'- --cGCGCGGCccgcgagggccauGACGaGUUGCuCGGugGGCu -3' miRNA: 3'- guaCGCGCCG-------------CUGUaCAACG-GCU--UCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 6289 | 0.66 | 0.761006 |
Target: 5'- --cGCGCGGCGguggagcgacuggaGCAg---GCCG-AGCg -3' miRNA: 3'- guaCGCGCCGC--------------UGUacaaCGGCuUCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 48486 | 0.66 | 0.753664 |
Target: 5'- -uUGgGacaCGGCGGCGUGUccUGCCccGGCa -3' miRNA: 3'- guACgC---GCCGCUGUACA--ACGGcuUCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 23590 | 0.66 | 0.753664 |
Target: 5'- uCcgGCaCGGCGGCGaGUUGCuCGAcGGUg -3' miRNA: 3'- -GuaCGcGCCGCUGUaCAACG-GCU-UCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 40311 | 0.66 | 0.721536 |
Target: 5'- -cUGCGCGGCGGCGaGcuccGCC-AGGUg -3' miRNA: 3'- guACGCGCCGCUGUaCaa--CGGcUUCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 4500 | 0.66 | 0.721536 |
Target: 5'- --cGCGCuGGCGACugg--GCCaacGAGGCg -3' miRNA: 3'- guaCGCG-CCGCUGuacaaCGG---CUUCG- -5' |
|||||||
11438 | 5' | -54 | NC_003085.1 | + | 11098 | 0.66 | 0.753664 |
Target: 5'- gAUGuCGcCGGCGGCAUucgUGCCcagGAAGUu -3' miRNA: 3'- gUAC-GC-GCCGCUGUAca-ACGG---CUUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home