Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11438 | 5' | -54 | NC_003085.1 | + | 34192 | 0.66 | 0.732354 |
Target: 5'- --gGCGCGGCGG-GUGagcucgGCCGcGGCc -3' miRNA: 3'- guaCGCGCCGCUgUACaa----CGGCuUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 4500 | 0.66 | 0.721536 |
Target: 5'- --cGCGCuGGCGACugg--GCCaacGAGGCg -3' miRNA: 3'- guaCGCG-CCGCUGuacaaCGG---CUUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 40311 | 0.66 | 0.721536 |
Target: 5'- -cUGCGCGGCGGCGaGcuccGCC-AGGUg -3' miRNA: 3'- guACGCGCCGCUGUaCaa--CGGcUUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 23590 | 0.66 | 0.753664 |
Target: 5'- uCcgGCaCGGCGGCGaGUUGCuCGAcGGUg -3' miRNA: 3'- -GuaCGcGCCGCUGUaCAACG-GCU-UCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 48486 | 0.66 | 0.753664 |
Target: 5'- -uUGgGacaCGGCGGCGUGUccUGCCccGGCa -3' miRNA: 3'- guACgC---GCCGCUGUACA--ACGGcuUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 26721 | 0.66 | 0.764132 |
Target: 5'- --aGgGCGGUGACGgcgcGgcGCCGguGCu -3' miRNA: 3'- guaCgCGCCGCUGUa---CaaCGGCuuCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 6289 | 0.66 | 0.761006 |
Target: 5'- --cGCGCGGCGguggagcgacuggaGCAg---GCCG-AGCg -3' miRNA: 3'- guaCGCGCCGC--------------UGUacaaCGGCuUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 25726 | 0.66 | 0.764132 |
Target: 5'- aCGUGUccuuCGGCGccACGgugGggGCCGggGCc -3' miRNA: 3'- -GUACGc---GCCGC--UGUa--CaaCGGCuuCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 34929 | 0.66 | 0.753664 |
Target: 5'- gGUGCaggcgcacGCGGCGGa--GUUGCUGGccGGCg -3' miRNA: 3'- gUACG--------CGCCGCUguaCAACGGCU--UCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 44318 | 0.66 | 0.753664 |
Target: 5'- --gGUGuuGCGACAUGgaUGCCuGGGCg -3' miRNA: 3'- guaCGCgcCGCUGUACa-ACGGcUUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 11098 | 0.66 | 0.753664 |
Target: 5'- gAUGuCGcCGGCGGCAUucgUGCCcagGAAGUu -3' miRNA: 3'- gUAC-GC-GCCGCUGUAca-ACGG---CUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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